Author: alteholz Date: 2012-12-02 18:08:04 +0000 (Sun, 02 Dec 2012) New Revision: 12580
Added: trunk/packages/vcftools/trunk/debian/patches/perl.patch Modified: trunk/packages/vcftools/trunk/debian/changelog trunk/packages/vcftools/trunk/debian/control trunk/packages/vcftools/trunk/debian/get-orig-source trunk/packages/vcftools/trunk/debian/patches/series Log: small improvements Modified: trunk/packages/vcftools/trunk/debian/changelog =================================================================== --- trunk/packages/vcftools/trunk/debian/changelog 2012-11-30 16:58:01 UTC (rev 12579) +++ trunk/packages/vcftools/trunk/debian/changelog 2012-12-02 18:08:04 UTC (rev 12580) @@ -1,3 +1,11 @@ +vcftools (0.1.9+dfsg-2) unstable; urgency=low + + * debian/control: description changed (Closes: #689058) + * debian/patches/perl.patch for new syntax (Closes: #689059) + * fix get-orig-source to handle dfsg + + -- Thorsten Alteholz <deb...@alteholz.de> Sun, 02 Dev 2012 19:00:00 +0100 + vcftools (0.1.9+dfsg-1) UNRELEASED; urgency=low * debian/copyright: Modified: trunk/packages/vcftools/trunk/debian/control =================================================================== --- trunk/packages/vcftools/trunk/debian/control 2012-11-30 16:58:01 UTC (rev 12579) +++ trunk/packages/vcftools/trunk/debian/control 2012-12-02 18:08:04 UTC (rev 12580) @@ -15,7 +15,7 @@ Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends} Recommends: tabix -Description: designed for working with VCF files +Description: Collection of tools to work with VCF files VCFtools is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide methods for working with VCF files: validating, merging, comparing Modified: trunk/packages/vcftools/trunk/debian/get-orig-source =================================================================== --- trunk/packages/vcftools/trunk/debian/get-orig-source 2012-11-30 16:58:01 UTC (rev 12579) +++ trunk/packages/vcftools/trunk/debian/get-orig-source 2012-12-02 18:08:04 UTC (rev 12580) @@ -20,6 +20,6 @@ find . -name "*.pdf" | xargs rm -f cd .. -GZIP="--best --no-name" tar --owner=root --group=root --mode=a+rX -czf "$PKG"_"$DVERSION".orig.tar.gz ${PKG}_${DVERSION} +GZIP="--best --no-name" tar --owner=root --group=root --mode=a+rX -czf "$PKG"_"$DVERSION"+dfsg.orig.tar.gz ${PKG}_${DVERSION} rm -rf ${PKG}_${DVERSION} Added: trunk/packages/vcftools/trunk/debian/patches/perl.patch =================================================================== --- trunk/packages/vcftools/trunk/debian/patches/perl.patch (rev 0) +++ trunk/packages/vcftools/trunk/debian/patches/perl.patch 2012-12-02 18:08:04 UTC (rev 12580) @@ -0,0 +1,15 @@ +Description: Don't use qw(...) as parentheses anymore (bad syntax now) +Author: Thorsten Alteholz <deb...@alteholz.de> +Index: vcftools_0.1.9/perl/Vcf.pm +=================================================================== +--- vcftools_0.1.9.orig/perl/Vcf.pm 2012-05-10 07:53:15.000000000 +0200 ++++ vcftools_0.1.9/perl/Vcf.pm 2012-12-02 18:55:40.000000000 +0100 +@@ -1619,7 +1619,7 @@ + } + if ( defined $out ) + { +- for my $key qw(fmtA fmtG infoA infoG) { if ( !exists($$out{$key}) ) { $$out{$key}=[] } } ++ for my $key (qw(fmtA fmtG infoA infoG)) { if ( !exists($$out{$key}) ) { $$out{$key}=[] } } + } + return $out; + } Modified: trunk/packages/vcftools/trunk/debian/patches/series =================================================================== --- trunk/packages/vcftools/trunk/debian/patches/series 2012-11-30 16:58:01 UTC (rev 12579) +++ trunk/packages/vcftools/trunk/debian/patches/series 2012-12-02 18:08:04 UTC (rev 12580) @@ -1,2 +1,3 @@ make.patch use-dpkg-buildflags.patch +perl.patch _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit