Author: alteholz Date: 2013-02-18 18:13:27 +0000 (Mon, 18 Feb 2013) New Revision: 13045
Modified: trunk/packages/autodocksuite/trunk/debian/changelog trunk/packages/autodocksuite/trunk/debian/control trunk/packages/autodocksuite/trunk/debian/copyright trunk/packages/autodocksuite/trunk/debian/patches/make.patch trunk/packages/autodocksuite/trunk/debian/rules Log: ready for upload Modified: trunk/packages/autodocksuite/trunk/debian/changelog =================================================================== --- trunk/packages/autodocksuite/trunk/debian/changelog 2013-02-18 15:07:24 UTC (rev 13044) +++ trunk/packages/autodocksuite/trunk/debian/changelog 2013-02-18 18:13:27 UTC (rev 13045) @@ -1,8 +1,14 @@ -autodocksuite (4.2.5.1-1) UNRELEASED; urgency=low +autodocksuite (4.2.5.1-1) experimental; urgency=low * new upstream version + * add make.patch + * debian/copyright: point to GPL-2 instead of just GPL + * debian/control: add more description to autodock-test and autogrid-test + * debian/rules: add autodock/RELEASENOTES as upstream ChangeLog + * debian/rules: introduce hardening flags + * debian/rules: activate "link time optimisation" - -- Thorsten Alteholz <deb...@alteholz.de> Sat, 16 Feb 2013 20:42:51 +0100 + -- Thorsten Alteholz <deb...@alteholz.de> Mon, 18 Feb 2013 19:00:00 +0100 autodocksuite (4.2.3-3) UNRELEASED; urgency=low Modified: trunk/packages/autodocksuite/trunk/debian/control =================================================================== --- trunk/packages/autodocksuite/trunk/debian/control 2013-02-18 15:07:24 UTC (rev 13044) +++ trunk/packages/autodocksuite/trunk/debian/control 2013-02-18 18:13:27 UTC (rev 13045) @@ -48,6 +48,13 @@ Suggests: autodock Depends: ${misc:Depends} Description: test files for AutoDock + AutoDock is a prime representative of the programs addressing the + simulation of the docking of fairly small chemical ligands to rather big + protein receptors. Earlier versions had all flexibility in the ligands + while the protein was kept rather ridgid. This latest version 4 also + allows for a flexibility of selected sidechains of surface residues, + i.e., takes the rotamers into account. + . This package contain the test files for the AutoDock program. Package: autogrid-test @@ -55,6 +62,10 @@ Suggests: autogrid Depends: ${misc:Depends} Description: test files for AutoGrid + The AutoDockSuite addresses the molecular analysis of the docking of + a smaller chemical compounds to their receptors of known three-dimensional + structure. + . This package contain the test files for the AutoGrid program. Package: autodock-getdata Modified: trunk/packages/autodocksuite/trunk/debian/copyright =================================================================== --- trunk/packages/autodocksuite/trunk/debian/copyright 2013-02-18 15:07:24 UTC (rev 13044) +++ trunk/packages/autodocksuite/trunk/debian/copyright 2013-02-18 18:13:27 UTC (rev 13045) @@ -56,7 +56,7 @@ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA On Debian systems, the complete text of the GNU General -Public License can be found in `/usr/share/common-licenses/GPL'. +Public License can be found in `/usr/share/common-licenses/GPL-2'. The Debian packaging is © 2007, Steffen Moeller <moel...@debian.org> and is licensed under the GPL, see above. Modified: trunk/packages/autodocksuite/trunk/debian/patches/make.patch =================================================================== --- trunk/packages/autodocksuite/trunk/debian/patches/make.patch 2013-02-18 15:07:24 UTC (rev 13044) +++ trunk/packages/autodocksuite/trunk/debian/patches/make.patch 2013-02-18 18:13:27 UTC (rev 13045) @@ -1,3 +1,6 @@ +Description: adapt make process to Debian build environment +Author: Thorsten Alteholz <deb...@alteholz.de> +Last-Update: 2013-02-16 Index: src/autogrid/Makefile.am =================================================================== --- src.orig/autogrid/Makefile.am 2013-02-17 18:47:22.000000000 +0100 Modified: trunk/packages/autodocksuite/trunk/debian/rules =================================================================== --- trunk/packages/autodocksuite/trunk/debian/rules 2013-02-18 15:07:24 UTC (rev 13044) +++ trunk/packages/autodocksuite/trunk/debian/rules 2013-02-18 18:13:27 UTC (rev 13045) @@ -6,19 +6,25 @@ SHELL := /bin/bash +CPPFLAGS:=$(shell dpkg-buildflags --get CPPFLAGS) +CFLAGS:=$(shell dpkg-buildflags --get CFLAGS) +CXXFLAGS:=$(shell dpkg-buildflags --get CXXFLAGS) +LDFLAGS:=$(shell dpkg-buildflags --get LDFLAGS) + + CXX=g++ CC=gcc #CXX=/usr/lib/gcc-snapshot/bin/g++ #CC=/usr/lib/gcc-snapshot/bin/gcc # see http://www.gentoo.org/proj/en/qa/asneeded.xml -LDFLAGS="-Wl,--as-needed" +LDFLAGS+="-Wl,--as-needed" -CFLAGS = -Wall -g +CFLAGS += -Wall -g # link time optimisation - as soon as gcc-4.5 hits the archive -#CFLAGS += -flto -#LDFLAGS += -flto +CFLAGS += -flto +LDFLAGS += -flto ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS))) CFLAGS += -O0 @@ -31,14 +37,14 @@ # the suggested const is not working sufficiently, for gcc-4.6 and higher #CFLAGS += -Wsuggest-attribute=const -CXXFLAGS=$(CFLAGS) +CXXFLAGS+=$(CFLAGS) configure: configure-stamp configure-stamp: $(QUILT_STAMPFN) dh_testdir set -e; \ for d in autodock autogrid; do \ - ( cd $$d && autoreconf -i && ./configure CC="$(CC)" CXX="$(CXX)" LDFLAGS="$(LDFLAGS)" CFLAGS="$(CFLAGS)" CXXFLAGS="$(CXXFLAGS)" --prefix=/usr ) \ + ( cd $$d && autoreconf -i && ./configure CC="$(CC)" CXX="$(CXX)" LDFLAGS="$(LDFLAGS)" CFLAGS="$(CFLAGS)" CXXFLAGS="$(CXXFLAGS)" CPPFLAGS="$(CPPFLAGS)" --prefix=/usr ) \ done touch configure-stamp @@ -49,11 +55,7 @@ build-arch-stamp: configure-stamp set -e; \ pwd; \ - find; \ for d in autodock autogrid; do $(MAKE) -C $$d; done -# for d in autogrid autodock; do \ -# ( cd $$d && $(MAKE)) \ -# done touch $@ build-indep: build-indep-stamp @@ -98,7 +100,7 @@ binary-common: dh_testdir dh_testroot - dh_installchangelogs + dh_installchangelogs autodock/RELEASENOTES dh_installdocs dh_installexamples dh_installman _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit