Author: osallou-guest
Date: 2013-05-20 07:19:13 +0000 (Mon, 20 May 2013)
New Revision: 13670
Added:
trunk/packages/circos/trunk/debian/patches/fix_manpage
Modified:
trunk/packages/circos/trunk/debian/changelog
trunk/packages/circos/trunk/debian/patches/configpath_add_etc
trunk/packages/circos/trunk/debian/patches/series
Log:
new upstream release
Modified: trunk/packages/circos/trunk/debian/changelog
===================================================================
--- trunk/packages/circos/trunk/debian/changelog 2013-05-20 00:18:19 UTC
(rev 13669)
+++ trunk/packages/circos/trunk/debian/changelog 2013-05-20 07:19:13 UTC
(rev 13670)
@@ -1,3 +1,9 @@
+circos (0.64-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Olivier Sallou <osal...@debian.org> Mon, 20 May 2013 09:01:27 +0200
+
circos (0.62.1-1) unstable; urgency=low
* New upstream release
Modified: trunk/packages/circos/trunk/debian/patches/configpath_add_etc
===================================================================
--- trunk/packages/circos/trunk/debian/patches/configpath_add_etc
2013-05-20 00:18:19 UTC (rev 13669)
+++ trunk/packages/circos/trunk/debian/patches/configpath_add_etc
2013-05-20 07:19:13 UTC (rev 13670)
@@ -4,25 +4,14 @@
Forwarded: not-needed
--- a/lib/Circos/Configuration.pm
+++ b/lib/Circos/Configuration.pm
-@@ -591,6 +591,7 @@
+@@ -693,6 +693,7 @@
}
-
+
my @configpath = (
+
"/etc/circos",
dirname($file),
dirname($file)."/etc",
"$FindBin::RealBin/etc",
---- a/lib/Circos/Utils.pm
-+++ b/lib/Circos/Utils.pm
-@@ -430,7 +430,7 @@
- }
-
- # look for the file in various directories
-- my @dir_1 = (getcwd,$FindBin::RealBin);
-+ my @dir_1 = (getcwd,$FindBin::RealBin,"/usr/share/circos");
- my @dir_2 = qw(. .. ../.. ../../..);
- my @dir_3 = qw(. etc data);
-
--- a/etc/makehuesteps
+++ b/etc/makehuesteps
@@ -1,4 +1,4 @@
@@ -31,3 +20,14 @@
use strict;
use Math::Round qw(round);
+--- a/lib/Circos/Utils.pm
++++ b/lib/Circos/Utils.pm
+@@ -441,7 +441,7 @@
+
+ # look for the file in various directories
+ # v0.63 added configuration directory to dir_1
+- my @dir_1 =
grep($_,getcwd,Circos::Configuration::fetch_conf("configdir"),$FindBin::RealBin);
++ my @dir_1 =
grep($_,getcwd,Circos::Configuration::fetch_conf("configdir"),$FindBin::RealBin,"/usr/share/circos");
+ my @dir_2 = qw(. .. ../.. ../../..);
+ my @dir_3 = qw(. etc data);
+
Added: trunk/packages/circos/trunk/debian/patches/fix_manpage
===================================================================
--- trunk/packages/circos/trunk/debian/patches/fix_manpage
(rev 0)
+++ trunk/packages/circos/trunk/debian/patches/fix_manpage 2013-05-20
07:19:13 UTC (rev 13670)
@@ -0,0 +1,25 @@
+Subject: fix errors from pod2man result
+Description: Perl file used as source for man page contains errors.
+Author: Olivier Sallou <osal...@debian.org>
+Last-Updated: 2013-05-20
+Forwarded: No
+--- a/lib/Circos.pm
++++ b/lib/Circos.pm
+@@ -7,7 +7,7 @@
+
+ =head1 NAME
+
+-Circos - Circular data visualizations for comparison of genomes, among other
things
++Circos \- Circular data visualizations for comparison of genomes, among
other things
+
+ =head1 SYNOPSIS
+
+@@ -6736,7 +6736,7 @@
+
+ =over
+
+-item * Hive plots
++=item * Hive plots
+
+ L<http://www.hiveplot.com>
+
Modified: trunk/packages/circos/trunk/debian/patches/series
===================================================================
--- trunk/packages/circos/trunk/debian/patches/series 2013-05-20 00:18:19 UTC
(rev 13669)
+++ trunk/packages/circos/trunk/debian/patches/series 2013-05-20 07:19:13 UTC
(rev 13670)
@@ -2,3 +2,4 @@
debianpackaging
configpath_add_etc
fix_examples
+fix_manpage
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