Author: osallou Date: 2014-11-25 17:44:08 +0000 (Tue, 25 Nov 2014) New Revision: 18516
Added: trunk/packages/ncbi-blast+/trunk/debian/patches/fix_compilation Modified: trunk/packages/ncbi-blast+/trunk/debian/changelog trunk/packages/ncbi-blast+/trunk/debian/patches/fix_lib_deps trunk/packages/ncbi-blast+/trunk/debian/patches/series trunk/packages/ncbi-blast+/trunk/debian/rules Log: adapt patches to new release, add status to changelog Modified: trunk/packages/ncbi-blast+/trunk/debian/changelog =================================================================== --- trunk/packages/ncbi-blast+/trunk/debian/changelog 2014-11-24 13:30:11 UTC (rev 18515) +++ trunk/packages/ncbi-blast+/trunk/debian/changelog 2014-11-25 17:44:08 UTC (rev 18516) @@ -3,6 +3,8 @@ * New upstream release * d/control: switch to Standards 3.9.6 [TODO] fix missing Makefile.flat + [ISSUE] problem at compilation: + /usr/bin/ld: blastp_app.o: undefined symbol «kBlastMinorVersion» [DONE] updates patches to new release -- Olivier Sallou <osal...@debian.org> Fri, 21 Nov 2014 18:21:26 +0100 Added: trunk/packages/ncbi-blast+/trunk/debian/patches/fix_compilation =================================================================== --- trunk/packages/ncbi-blast+/trunk/debian/patches/fix_compilation (rev 0) +++ trunk/packages/ncbi-blast+/trunk/debian/patches/fix_compilation 2014-11-25 17:44:08 UTC (rev 18516) @@ -0,0 +1,11 @@ +--- a/c++/src/util/regexp/pcretest.c ++++ b/c++/src/util/regexp/pcretest.c +@@ -250,7 +250,7 @@ + /* Read the next line by normal means, prompting if the file is stdin. */ + + { +- if (f == stdin) printf(prompt); ++ if (f == stdin) printf("%s",prompt); + if (fgets((char *)here, rlen, f) == NULL) + return (here == start)? NULL : start; + } Modified: trunk/packages/ncbi-blast+/trunk/debian/patches/fix_lib_deps =================================================================== --- trunk/packages/ncbi-blast+/trunk/debian/patches/fix_lib_deps 2014-11-24 13:30:11 UTC (rev 18515) +++ trunk/packages/ncbi-blast+/trunk/debian/patches/fix_lib_deps 2014-11-25 17:44:08 UTC (rev 18516) @@ -336,7 +336,7 @@ # Dependencies for shared library DLL_LIB = ncbi_xreader$(DLL) -+DLL_DLIB = ncbi_xreader_id2 ncbi_xreader_id1 ncbi_xreader_cache ncbi_xreader \ ++DLL_DLIB = id2 id1 ncbi_xreader \ + xobjmgr seq xutil xncbi + WATCHERS = vasilche Modified: trunk/packages/ncbi-blast+/trunk/debian/patches/series =================================================================== --- trunk/packages/ncbi-blast+/trunk/debian/patches/series 2014-11-24 13:30:11 UTC (rev 18515) +++ trunk/packages/ncbi-blast+/trunk/debian/patches/series 2014-11-25 17:44:08 UTC (rev 18516) @@ -6,3 +6,4 @@ use_pie_for_apps skip_services_unit_test fix_configure +fix_compilation Modified: trunk/packages/ncbi-blast+/trunk/debian/rules =================================================================== --- trunk/packages/ncbi-blast+/trunk/debian/rules 2014-11-24 13:30:11 UTC (rev 18515) +++ trunk/packages/ncbi-blast+/trunk/debian/rules 2014-11-25 17:44:08 UTC (rev 18516) @@ -42,7 +42,8 @@ override_dh_auto_build: cd c++/BUILD/build && \ - make -f Makefile.flat all_projects="$(proj)" + make all_r +# make -f Makefile.flat all_projects="$(proj)" override_dh_auto_test: -dh_auto_test _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit