Author: sascha-guest
Date: 2015-01-31 11:44:29 +0000 (Sat, 31 Jan 2015)
New Revision: 18660
Added:
trunk/packages/barrnap/trunk/debian/README.source
Modified:
trunk/packages/barrnap/trunk/debian/rules
Log:
add README.source
Added: trunk/packages/barrnap/trunk/debian/README.source
===================================================================
--- trunk/packages/barrnap/trunk/debian/README.source
(rev 0)
+++ trunk/packages/barrnap/trunk/debian/README.source 2015-01-31 11:44:29 UTC
(rev 18660)
@@ -0,0 +1,3 @@
+The upstream source contains .hmm files with a non-free license. Use the
+get-orig-source target to repack the upstream source, removing the problematic
+HMMs in the process.
Modified: trunk/packages/barrnap/trunk/debian/rules
===================================================================
--- trunk/packages/barrnap/trunk/debian/rules 2015-01-31 11:39:35 UTC (rev
18659)
+++ trunk/packages/barrnap/trunk/debian/rules 2015-01-31 11:44:29 UTC (rev
18660)
@@ -10,22 +10,37 @@
dh $@ --parallel
override_dh_auto_build:
- mkdir db/free
- debian/filter_hmms.lua 28S < db/euk.hmm > db/free/euk.hmm
- debian/filter_hmms.lua 23S < db/arc.hmm > db/free/arc.hmm
- debian/filter_hmms.lua 23S < db/bac.hmm > db/free/bac.hmm
- mkdir db/nonfree
- debian/filter_hmms.lua 28S t < db/euk.hmm > db/nonfree/euk.hmm
- debian/filter_hmms.lua 23S t < db/arc.hmm > db/nonfree/arc.hmm
- debian/filter_hmms.lua 23S t < db/bac.hmm > db/nonfree/bac.hmm
+ # pass
override_dh_auto_install:
# pass
override_dh_auto_clean:
- rm -rf db/free db/nonfree
+ rm -rf db/free
get-orig-source:
uscan --verbose --force-download --repack --compression xz --destdir=..
- mv ../barrnap_$(OVERSION).orig.tar.xz ../barrnap_$(VERSION).orig.tar.xz
-
+ unxz ../barrnap_$(OVERSION).orig.tar.xz
+ mkdir -p debian/repack-tmp
+ tar xf ../barrnap_$(OVERSION).orig.tar -C debian/repack-tmp
+ rm ../barrnap_$(OVERSION).orig.tar
+ mkdir -p debian/repack-tmp/barrnap-$(OVERSION)/db/free
+ debian/filter_hmms.lua 28S < \
+ debian/repack-tmp/barrnap-$(OVERSION)/db/euk.hmm > \
+ debian/repack-tmp/barrnap-$(OVERSION)/db/free/euk.hmm
+ debian/filter_hmms.lua 23S < \
+ debian/repack-tmp/barrnap-$(OVERSION)/db/arc.hmm > \
+ debian/repack-tmp/barrnap-$(OVERSION)/db/free/arc.hmm
+ debian/filter_hmms.lua 23S < \
+ debian/repack-tmp/barrnap-$(OVERSION)/db/bac.hmm > \
+ debian/repack-tmp/barrnap-$(OVERSION)/db/free/bac.hmm
+ mv debian/repack-tmp/barrnap-$(OVERSION)/db/free/euk.hmm \
+ debian/repack-tmp/barrnap-$(OVERSION)/db/euk.hmm
+ mv debian/repack-tmp/barrnap-$(OVERSION)/db/free/bac.hmm \
+ debian/repack-tmp/barrnap-$(OVERSION)/db/bac.hmm
+ mv debian/repack-tmp/barrnap-$(OVERSION)/db/free/arc.hmm \
+ debian/repack-tmp/barrnap-$(OVERSION)/db/arc.hmm
+ rm -rf debian/repack-tmp/barrnap-$(OVERSION)/db/free
+ tar cf ../barrnap_$(VERSION).orig.tar -C debian/repack-tmp
barrnap-$(OVERSION)
+ xz ../barrnap_$(VERSION).orig.tar
+ rm -rf debian/repack-tmp
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