Author: plessy Date: 2009-10-02 05:17:11 +0000 (Fri, 02 Oct 2009) New Revision: 4117
Modified: trunk/packages/bioperl-run/trunk/debian/changelog trunk/packages/bioperl-run/trunk/debian/control trunk/packages/bioperl-run/trunk/debian/rules Log: New upstream release in preparation. Modified: trunk/packages/bioperl-run/trunk/debian/changelog =================================================================== --- trunk/packages/bioperl-run/trunk/debian/changelog 2009-10-02 04:28:53 UTC (rev 4116) +++ trunk/packages/bioperl-run/trunk/debian/changelog 2009-10-02 05:17:11 UTC (rev 4117) @@ -1,3 +1,16 @@ +bioperl-run (1.6.1+rc1-1) UNRELEASED; urgency=low + + TODO: make renamed EMBOSS programs accessible. + + * New upstream release in preparation. + * debian/rules: + - Re-enabled the tests. + * debian/control: + - Refreshed the list of packages for which wrappers are provided, in the + Suggests field as well as in an experimental Build-Recommends field. + + -- Charles Plessy <ple...@debian.org> Fri, 02 Oct 2009 13:34:41 +0900 + bioperl-run (1.6.1-1) unstable; urgency=low * New upstream release. Modified: trunk/packages/bioperl-run/trunk/debian/control =================================================================== --- trunk/packages/bioperl-run/trunk/debian/control 2009-10-02 04:28:53 UTC (rev 4116) +++ trunk/packages/bioperl-run/trunk/debian/control 2009-10-02 05:17:11 UTC (rev 4117) @@ -4,6 +4,13 @@ Build-Depends: debhelper (>= 7.0.50), libmodule-build-perl Build-Depends-Indep: perl, bioperl (>= 1.6.0), libalgorithm-diff-perl, libipc-run-perl, libio-string-perl, libxml-twig-perl, libarray-compare-perl, libtree-dagnode-perl +# Here is a list of all the packages and prospective packages for which wrappers are provided. +XS-Build-Recommends: coils, emboss, eponine, footprinter, wise, genscan, hmmer, + pise, ensembl, fingerprintscan, prscan, repeatmasker, seg, signalp, tmhmm, + tribe, paml, molphy, phylip, clustalw, sim4, t-coffee, blast2, fasta, lagan, + vista-align, amap-align, blat, +# This Perl library is needed for the network tests. + libwww-perl Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> DM-Upload-Allowed: yes Uploaders: Charles Plessy <ple...@debian.org> @@ -15,8 +22,11 @@ Package: bioperl-run Architecture: all Depends: ${misc:Depends}, bioperl (>= 1.6.0) -Recommends: libalgorithm-diff-perl, libipc-run-perl, libio-string-perl, libxml-twig-perl -Suggests: amap-align, emboss, hmmer, wise, molphy, phylip, clustalw, sim4, t-coffee, blast2, exonerate +Recommends: libalgorithm-diff-perl, libipc-run-perl, libio-string-perl, libxml-twig-perl, libwww-perl +Suggests: coils, emboss, eponine, footprinter, wise, genscan, hmmer, pise, + ensembl, fingerprintscan, prscan, repeatmasker, seg, signalp, tmhmm, tribe, + paml, molphy, phylip, clustalw, sim4, t-coffee, blast2, fasta, lagan, + vista-align, amap-align, blat Description: Wrapper modules for BioPerl Contains modules that provide a Perl interface to various bioinformatics applications to allow them to be Modified: trunk/packages/bioperl-run/trunk/debian/rules =================================================================== --- trunk/packages/bioperl-run/trunk/debian/rules 2009-10-02 04:28:53 UTC (rev 4116) +++ trunk/packages/bioperl-run/trunk/debian/rules 2009-10-02 05:17:11 UTC (rev 4117) @@ -5,8 +5,8 @@ dh build touch $@ -# Test suite is failing on buildds because it does not detect correctly the absence of the Eponine program. override_dh_auto_test: + PATH=$$PATH:/usr/lib/emboss dh_auto_test clean: dh $@ _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit