[med-svn] [python-pysam] 01/01: pristine-tar data for python-pysam_0.8.3+ds1.orig.tar.xz

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[med-svn] [python-pysam] branch pristine-tar updated (c3a04c4 -> 8c538e3)

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[med-svn] [python-pysam] 02/02: Package ready for round-2 review

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[med-svn] [python-pysam] 01/02: Revamp debian/copyright

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[med-svn] [python-pysam] branch master updated (77f317a -> 479e1ec)

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[med-svn] [python-pbcore] 01/07: Provide python3 package

thon code + These patches were mostly generated by running + python-modernize on the source tree. setup.py was then + slightly modified by hand. +Author: Afif Elghraoui +Forwarded: no +Last-Update: 2015-06-28 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- python-pbcore

[med-svn] [python-pbcore] branch master updated (3a73532 -> 4b99c05)

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[med-svn] [python-pbcore] 04/07: Add autopkgtest for python3 package

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[med-svn] [python-pbcore] 05/07: Remove TODO list

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[med-svn] [python-pbcore] 06/07: Update uscan calls to append suffix to package name

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[med-svn] [python-pbcore] 02/07: Prepare python-pbcore-data package

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[med-svn] [python-pbcore] 03/07: Prepare documentation package

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[med-svn] [python-pbcore] 07/07: Package ready for review.

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[med-svn] [python-cobra] 01/10: Update watch file to pick up alpha and beta releases

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[med-svn] [python-cobra] branch master updated (53ba895 -> 4f620bb)

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[med-svn] [python-cobra] 03/10: Merge tag 'upstream/0.4.0b1'

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[med-svn] [python-cobra] 05/10: Remove copyright statements for files removed upstream

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[med-svn] [python-cobra] 01/01: pristine-tar data for python-cobra_0.4.0b1.orig.tar.gz

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[med-svn] [python-cobra] branch upstream updated (35beca5 -> 515cf06)

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[med-svn] [python-cobra] 04/10: Remove obsolete patches

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[med-svn] [python-cobra] branch pristine-tar updated (5ef93c4 -> 63642e1)

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[med-svn] [python-cobra] 08/10: Add build-dependencies on python(3)-six

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[med-svn] [python-cobra] 09/10: Disable building of documentation until Sphinx 1.3 is available

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[med-svn] [python-cobra] 10/10: Package ready for review

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[med-svn] [python-cobra] 06/10: Update d/copyright to reflect new upstream dual-licensing and correct gpl3 mistake

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[med-svn] [python-cobra] 07/10: Refine dh_install overrides to exclude jython code from python3 package

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[med-svn] [python-cobra] annotated tag upstream/0.4.0b1 created (now 61c4bfd)

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[med-svn] [python-pbcore] branch master updated (29101cc -> 27f6073)

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[med-svn] [python-pbcore] 02/02: Mark package as unreleased again

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[med-svn] [python-pbcore] 01/02: Make corrections to debian/copyright

This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit 748cbd7abb67655e3256c373873f7dfd789001c2 Author: Afif Elghraoui Date: Fri Jul 10 18:15:35 2015 -0700 Make corrections to debian/copyright

[med-svn] [python-cobra] 05/05: Package ready for upload

This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-cobra. commit e374e9ad388384fc2d69f04eb8e4f1da5ef9c087 Author: Afif Elghraoui Date: Fri Jul 10 18:37:33 2015 -0700 Package ready for upload --- debian

[med-svn] [python-cobra] 01/05: Add more recommended packages in d/control

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[med-svn] [python-cobra] 03/05: Merge branch 'master' of git+ssh://git.debian.org/git/debian-med/python-cobra

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[med-svn] [python-cobra] 04/05: Really remove jython files from python3-package

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[med-svn] [python-cobra] branch master updated (949447e -> e374e9a)

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[med-svn] [python-cobra] 02/05: Add suggestion of jython for python-cobra

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[med-svn] [python-pysam] branch master updated (8878539 -> 9d54866)

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[med-svn] [python-pysam] 02/02: Package ready for review for unstable

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[med-svn] [python-pysam] 01/02: Improve python3 compatibility for upstream test sources

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[med-svn] [python-pbcore] 01/01: Change license name to represent BSD similarity only

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[med-svn] [python-pbcore] branch master updated (27f6073 -> b0130e0)

This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository python-pbcore. from 27f6073 Mark package as unreleased again new b0130e0 Change license name to represent BSD similarity only The 1 revisions listed abo

[med-svn] [python-pysam] 03/06: Fix autopkgtests

This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pysam. commit d9adfd86bbe73d4469781b728734579c2d09a7d4 Author: Afif Elghraoui Date: Sat Jul 11 15:17:02 2015 -0700 Fix autopkgtests --- debian/tests

[med-svn] [python-pysam] 05/06: Do not provide test data package

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[med-svn] [python-pysam] 06/06: Update changelog

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[med-svn] [python-pysam] branch master updated (9d54866 -> c758c9b)

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[med-svn] [python-pysam] 04/06: Remove unnecessary symlinks

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[med-svn] [python-pysam] 01/06: Revamp packaging of test data

This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pysam. commit 6ec8aab49e14011687ef1b84b22db675b78ec1d5 Author: Afif Elghraoui Date: Sat Jul 11 13:57:10 2015 -0700 Revamp packaging of test data

[med-svn] [python-pysam] 02/06: refresh older patches

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[med-svn] [python-pysam] branch separate-tests-package created (now d7515d8)

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[med-svn] [python-pysam] 04/04: Build test data in d/rules

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[med-svn] [python-pysam] 02/04: Revert "Revamp packaging of test data"

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[med-svn] [python-pysam] 03/04: Remove extraneous test dependencies already included by @

This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch separate-tests-package in repository python-pysam. commit 430aaae5f21e0420e153bb71441faeb9e0672b76 Author: Afif Elghraoui Date: Sun Jul 12 07:43:24 2015 -0700 Remove extraneous test

[med-svn] [python-pysam] 01/01: List more test dependencies

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[med-svn] [python-pysam] branch master updated (c758c9b -> 9dd45f4)

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[med-svn] [python-pysam] 01/04: Revert "Fix autopkgtests"

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[med-svn] [python-cobra] branch debian/8 created (now f1d22e6)

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[med-svn] [python-cobra] 01/01: Prepare backport

This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch debian/8 in repository python-cobra. commit f1d22e63a3325054114b9f6388551f952cbdf847 Author: Afif Elghraoui Date: Fri Jul 17 00:14:07 2015 -0700 Prepare backport --- debian/changelog

[med-svn] [python-pysam] branch master updated (8fe0ebe -> aed6cc7)

This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository python-pysam. from 8fe0ebe The automatic nosetest trigger does not work and this it is switched back to manual nosetests invocation adds 359a5ae Revert "

[med-svn] [python-pysam] 01/01: Merge branch 'separate-tests-package'

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[med-svn] [python-pysam] 01/08: Don't build test data at the samae time as the package sources

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[med-svn] [python-pysam] 08/08: Update changelog - ready for upload

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[med-svn] [python-pysam] 06/08: Add myself to uploaders

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[med-svn] [python-pysam] 07/08: Remove unused lintian override

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[med-svn] [python-pysam] 03/08: Fix error in sam_mpileup.patch

This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pysam. commit 6ba7fa2e8a0c06cd4ea6572a189df4e42eb4dce4 Author: Afif Elghraoui Date: Fri Jul 24 00:32:08 2015 -0700 Fix error in sam_mpileup.patch

[med-svn] [python-pysam] 04/08: Remove ex1.bam hack since it is apparently being created without it

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[med-svn] [python-pysam] 05/08: Delete __pycache__ directory in clean-tests recipe

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[med-svn] [python-pysam] 02/08: Move test directory cleaning commands to a separate recipe

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[med-svn] [python-pysam] branch master updated (aed6cc7 -> 8213ee2)

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[med-svn] [python-cobra] 03/03: Make matplotlib suggested and pandas recommended as advised by upstream

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[med-svn] [python-cobra] 01/03: Appropriately change some 'recommends' to 'suggests'

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[med-svn] [python-cobra] branch master updated (d9e897e -> 4aa43cd)

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[med-svn] [python-cobra] 02/03: Adjust package relationships as requested by upstream

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[med-svn] [python-pysam] branch master updated (a5bd0af -> 2334c5d)

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[med-svn] [python-pysam] 01/03: Forward mpileup patch upstream

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[med-svn] [python-pysam] 03/03: Merge branch 'master' of git+ssh://git.debian.org/git/debian-med/python-pysam

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[med-svn] [python-pysam] 02/03: Indicate patch independently created upstream

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[med-svn] [blasr] branch master created (now 8511760)

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[med-svn] [blasr] branch pristine-tar created (now 89f330a)

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[med-svn] [blasr] 01/01: pristine-tar data for blasr_0~20150724+git3ca7fe8.orig.tar.xz

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[med-svn] [blasr] 02/02: Initial Packaging

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[med-svn] [blasr] branch upstream created (now e00b029)

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[med-svn] [blasr] annotated tag upstream/0_20150724+git3ca7fe8 created (now ec0c54f)

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[med-svn] [python-pbh5tools] 02/02: Merge branch 'master' of git+ssh://git.debian.org/git/debian-med/python-pbh5tools

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[med-svn] [python-pbh5tools] 01/02: Add d/changelog complete with ITP number

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[med-svn] [python-pbh5tools] branch master updated (a0679fb -> 212107c)

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[med-svn] [blasr] branch master updated (8511760 -> fb596d8)

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[med-svn] [blasr] 01/02: Statically link native libraries and dynamically link external ones

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[med-svn] [blasr] 02/02: Add draft man pages generated by help2man

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[med-svn] [blasr] 01/12: Fix git revision ID in manpages

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[med-svn] [blasr] branch master updated (fb596d8 -> 4e52e20)

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[med-svn] [blasr] 02/12: Combine the two blasr help files into one manpage

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[med-svn] [blasr] 12/12: Partially rework blasr manpage

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[med-svn] [blasr] 05/12: Finalize manpage for sdpMatcher

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[med-svn] [blasr] 10/12: Finalize manpage for pls2fasta

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[med-svn] [blasr] 09/12: Finalize manpage for samFilter

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[med-svn] [blasr] 11/12: Finalize loadPulses manpage

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[med-svn] [blasr] 04/12: finalize toAfg.1

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[med-svn] [blasr] 07/12: Finalize samtom4 manpage

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[med-svn] [blasr] 03/12: Add 'See Also' sections

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[med-svn] [blasr] 06/12: Finalize sawriter manpage

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