[med-svn] [fastaq] branch upstream updated (3817361 -> e83fffb)

2015-11-30 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch upstream in repository fastaq. from 3817361 Imported Upstream version 3.10.1 new e83fffb Imported Upstream version 3.11.0 The 1 revisions listed above as "new" are entirel

[med-svn] [fastaq] 02/03: Imported Upstream version 3.11.0

2015-11-30 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository fastaq. commit e83fffbce611f881bbb5f63af44e71a99dc936c0 Author: Sascha Steinbiss Date: Mon Nov 30 19:09:05 2015 + Imported Upstream version 3.11.0

[med-svn] [fastaq] 03/03: Merge tag 'upstream/3.11.0'

2015-11-30 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository fastaq. commit 7ce2d8cb8f190921fc8ee0804f8615eb6d67f575 Merge: bca96a6 e83fffb Author: Sascha Steinbiss Date: Mon Nov 30 19:09:06 2015 + Merge tag 'ups

[med-svn] r20593 - in trunk/packages/aragorn/trunk/debian: . tests

2015-12-01 Thread Sascha Steinbiss
version. + + -- Sascha Steinbiss Tue, 01 Dec 2015 23:32:50 + + aragorn (1.2.36-4) unstable; urgency=low * Fix hardening flags Modified: trunk/packages/aragorn/trunk/debian/control === --- trunk/packages/aragorn/trunk/debian

[med-svn] r20594 - in trunk/packages/aragorn/tags: . 1.2.36-5/debian

2015-12-01 Thread Sascha Steinbiss
(rev 20594) @@ -1,27 +0,0 @@ -aragorn (1.2.36-4) unstable; urgency=low - - * Fix hardening flags - * Add patch description - - -- Sascha Steinbiss Wed, 16 Jul 2014 23:29:34 +0100 - -aragorn (1.2.36-3) unstable; urgency=low - - * hardening-includes => use dpkg-buildflags instead - * deb

[med-svn] r20634 - in trunk/packages/genometools/trunk/debian: . patches strip-nondeterminism tests

2015-12-04 Thread Sascha Steinbiss
+ * Add autopkgtests + + -- Sascha Steinbiss Fri, 04 Dec 2015 22:18:11 + + genometools (1.5.7-3) unstable; urgency=low * d/control: remove obsolete dependency on libncurses5 Modified: trunk/packages/genometools/trunk/debian/patches/series

[med-svn] r20635 - trunk/packages/genometools/trunk/debian/patches

2015-12-04 Thread Sascha Steinbiss
Author: sascha-guest Date: 2015-12-04 22:48:45 + (Fri, 04 Dec 2015) New Revision: 20635 Modified: trunk/packages/genometools/trunk/debian/patches/sort-inputs trunk/packages/genometools/trunk/debian/patches/use-mx32 Log: cme fix dpkg Modified: trunk/packages/genometools/trunk/debian/pat

[med-svn] r20636 - in trunk/packages/genometools/tags: . 1.5.7-4/debian 1.5.7-4/debian/patches 1.5.7-4/debian/strip-nondeterminism

2015-12-04 Thread Sascha Steinbiss
dependency on libncurses5 -Closes: #804576 - - -- Sascha Steinbiss Mon, 09 Nov 2015 19:15:29 + - -genometools (1.5.7-2) unstable; urgency=low - - * disable parallel building - - -- Sascha Steinbiss Sat, 10 Oct 2015 12:04:37 + - -genometools (1.5.7-1) unstable; urgency=low

[med-svn] r20637 - trunk/packages/genometools/trunk/debian

2015-12-04 Thread Sascha Steinbiss
Author: sascha-guest Date: 2015-12-05 01:52:09 + (Sat, 05 Dec 2015) New Revision: 20637 Modified: trunk/packages/genometools/trunk/debian/rules Log: use target arch Modified: trunk/packages/genometools/trunk/debian/rules ===

[med-svn] [ariba] branch master created (now 0ffb158)

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch master in repository ariba. at 0ffb158 fix runtime depends This branch includes the following new commits: new a8ce3c5 Imported Upstream version 0.6.0 new 9cfc5

[med-svn] [ariba] branch upstream created (now a8ce3c5)

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch upstream in repository ariba. at a8ce3c5 Imported Upstream version 0.6.0 No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.de

[med-svn] [ariba] 05/06: fix spelling

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository ariba. commit 9ef44d9c06a8d068ef99b344c806f94e22a5f539 Author: Sascha Steinbiss Date: Sat Dec 5 10:55:36 2015 + fix spelling --- debian/patches/series

[med-svn] [ariba] 04/06: add manpages

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository ariba. commit 8cb38711c036a61a871a45be74c1ee66e1cdc0e2 Author: Sascha Steinbiss Date: Sat Dec 5 10:55:19 2015 + add manpages --- debian/ariba.manpages | 1

[med-svn] [ariba] 01/01: pristine-tar data for ariba_0.6.0.orig.tar.gz

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch pristine-tar in repository ariba. commit f973dd87b863680dc28934d976beab3c03a833f4 Author: Sascha Steinbiss Date: Sat Dec 5 07:43:07 2015 + pristine-tar data for ariba_0.6.0

[med-svn] [ariba] 06/06: fix runtime depends

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository ariba. commit 0ffb1584f554b382e944ab4b967f7e5c682341e3 Author: Sascha Steinbiss Date: Sat Dec 5 10:57:22 2015 + fix runtime depends --- debian/control | 2

[med-svn] [ariba] 02/06: add debian dir

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository ariba. commit 9cfc50f1b54ed35488b5f14fd31795088a87967b Author: Sascha Steinbiss Date: Sat Dec 5 07:55:31 2015 + add debian dir --- debian/changelog | 5

[med-svn] [ariba] branch pristine-tar created (now f973dd8)

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch pristine-tar in repository ariba. at f973dd8 pristine-tar data for ariba_0.6.0.orig.tar.gz This branch includes the following new commits: new f973dd8 pristine-tar data

[med-svn] [ariba] 03/06: flesh out first package

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository ariba. commit afa737f1c23c933751dc63be04fc166bcf973e1e Author: Sascha Steinbiss Date: Sat Dec 5 08:29:01 2015 + flesh out first package --- debian/changelog

[med-svn] [ariba] annotated tag upstream/0.6.0 created (now 577f82d)

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to annotated tag upstream/0.6.0 in repository ariba. at 577f82d (tag) tagging a8ce3c5113b2d265aadb5a4c91a668bdb9cf5cd0 (commit) tagged by Sascha Steinbiss on Sat Dec 5 07:43

[med-svn] [ariba] branch master updated (0ffb158 -> 03d63f6)

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch master in repository ariba. from 0ffb158 fix runtime depends new 66abfe4 remove unavailable tests, adjust binary names new 03d63f6 cme fix dpkg The 2 revisions l

[med-svn] [ariba] 02/02: cme fix dpkg

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository ariba. commit 03d63f6f87637577d7e5a8908ee18a54d86eb2b0 Author: Sascha Steinbiss Date: Sat Dec 5 12:49:38 2015 + cme fix dpkg --- debian/patches

[med-svn] [ariba] 01/02: remove unavailable tests, adjust binary names

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository ariba. commit 66abfe45301b166c3e07f81c20b7380ad717719a Author: Sascha Steinbiss Date: Sat Dec 5 12:49:10 2015 + remove unavailable tests, adjust binary names

[med-svn] [ariba] 01/01: use patch

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository ariba. commit 3181da68dcd00f58cae15365ce27eb5a12db6219 Author: Sascha Steinbiss Date: Sat Dec 5 12:57:10 2015 + use patch --- debian/patches/series | 1 + 1

[med-svn] [ariba] 02/02: make velvet the default assembler

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository ariba. commit df6a4815f84c2c84293841f55663f7d1c6722b4c Author: Sascha Steinbiss Date: Sat Dec 5 12:56:37 2015 + make velvet the default assembler

[med-svn] [ariba] branch master updated (df6a481 -> 3181da6)

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch master in repository ariba. from df6a481 make velvet the default assembler new 3181da6 use patch The 1 revisions listed above as "new" are entirely new to this repository

[med-svn] [ariba] 01/02: add README with time delay

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository ariba. commit f6b88a94413e28d4ea3b1cdc4cc2c1c6da1d2dc0 Author: Sascha Steinbiss Date: Sat Dec 5 12:51:55 2015 + add README with time delay --- debian

[med-svn] [ariba] branch master updated (03d63f6 -> df6a481)

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch master in repository ariba. from 03d63f6 cme fix dpkg new f6b88a9 add README with time delay new df6a481 make velvet the default assembler The 2 revisions listed

[med-svn] [ariba] 01/01: cme fix dpkg

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository ariba. commit 246694a80bc6d2355e7b9e46c6e97ff1cc626136 Author: Sascha Steinbiss Date: Sat Dec 5 13:01:12 2015 + cme fix dpkg --- debian/patches

[med-svn] [ariba] branch master updated (3181da6 -> 246694a)

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch master in repository ariba. from 3181da6 use patch new 246694a cme fix dpkg The 1 revisions listed above as "new" are entirely new to this repository and will be described

[med-svn] [ariba] 01/01: add nose tests

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository ariba. commit 922a7a70ccf1218ea5688020ff584b8bd99214bb Author: Sascha Steinbiss Date: Sat Dec 5 13:45:27 2015 + add nose tests --- debian/control | 9

[med-svn] [ariba] branch master updated (246694a -> 922a7a7)

2015-12-05 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch master in repository ariba. from 246694a cme fix dpkg new 922a7a7 add nose tests The 1 revisions listed above as "new" are entirely new to this repository and will be desc

[med-svn] [libtabixpp] branch master updated (58408e0 -> 457e505)

2015-12-06 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch master in repository libtabixpp. from 58408e0 Stumbled upon this one at the end of the chain of dependencies of free-bayes; just fix the build for the moment new 8af1d9f I

[med-svn] [libtabixpp] annotated tag upstream/0.0.20151117 created (now f95d18c)

2015-12-06 Thread Sascha Steinbiss
Sascha Steinbiss on Sun Dec 6 12:48:03 2015 + - Log - Upstream version 0.0.20151117 Sascha Steinbiss (1): Imported Upstream version 0.0.20151117

[med-svn] [libtabixpp] 01/01: pristine-tar data for libtabixpp_0.0.20151117.orig.tar.bz2

2015-12-06 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch pristine-tar in repository libtabixpp. commit 99b410ac85e32ae81762c7c1b429055dc750f1b2 Author: Sascha Steinbiss Date: Sun Dec 6 12:48:03 2015 + pristine-tar data for

[med-svn] [libtabixpp] branch upstream updated (f6dfb9c -> 8af1d9f)

2015-12-06 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch upstream in repository libtabixpp. from f6dfb9c Imported Upstream version 0.0.20141119 new 8af1d9f Imported Upstream version 0.0.20151117 The 1 revisions listed above as "

[med-svn] [libtabixpp] 02/03: Merge tag 'upstream/0.0.20151117'

2015-12-06 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository libtabixpp. commit e17342b6b8d98ff4e05746a863294e620caf7136 Merge: 58408e0 8af1d9f Author: Sascha Steinbiss Date: Sun Dec 6 12:48:03 2015 + Merge tag

[med-svn] [libtabixpp] 03/03: flesh out package a bit

2015-12-06 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository libtabixpp. commit 457e505cc279d76a16b62fc7557a5ad3059f2133 Author: Sascha Steinbiss Date: Sun Dec 6 18:59:23 2015 + flesh out package a bit --- debian

[med-svn] [libtabixpp] branch pristine-tar updated (eda3bce -> 99b410a)

2015-12-06 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch pristine-tar in repository libtabixpp. from eda3bce pristine-tar data for libtabixpp_0.0.20141119.orig.tar.xz new 99b410a pristine-tar data for libtabixpp_0.0.20151117.orig

[med-svn] [codonw] 02/02: version bump

2015-12-07 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository codonw. commit 09ce48dbe5c56641a5d45cae55183a6c59f9c841 Author: Sascha Steinbiss Date: Mon Dec 7 22:52:43 2015 + version bump --- debian/changelog | 7

[med-svn] [codonw] branch master updated (830ba33 -> 09ce48d)

2015-12-07 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch master in repository codonw. from 830ba33 rename links to codonw-* new e3140d3 do not print compilation date/time new 09ce48d version bump The 2 revisions listed

[med-svn] [codonw] 01/02: do not print compilation date/time

2015-12-07 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository codonw. commit e3140d330e17f0281498721e09ec94bf4cfe3a80 Author: Sascha Steinbiss Date: Mon Dec 7 22:51:42 2015 + do not print compilation date/time

[med-svn] [codonw] annotated tag debian/1.4.4-2 created (now 289b1ae)

2015-12-07 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to annotated tag debian/1.4.4-2 in repository codonw. at 289b1ae (tag) tagging 09ce48dbe5c56641a5d45cae55183a6c59f9c841 (commit) replaces upstream/1.4.4 tagged by Sascha Steinbiss

[med-svn] r20669 - in trunk/packages/genometools/trunk/debian: . patches tests

2015-12-07 Thread Sascha Steinbiss
(rev 20668) +++ trunk/packages/genometools/trunk/debian/changelog 2015-12-08 00:44:48 UTC (rev 20669) @@ -1,3 +1,10 @@ +genometools (1.5.7-5) unstable; urgency=medium + + * Try to load correct renamed .so file in Python bindings + * Refresh patches + + -- Sascha Steinbiss Tue, 08 Dec 2015 00

[med-svn] r20670 - trunk/packages/genometools/trunk/debian

2015-12-07 Thread Sascha Steinbiss
+ * Use DEB_TARGET_ARCH to determine build archs -- Sascha Steinbiss Tue, 08 Dec 2015 00:42:49 + @@ -19,13 +20,13 @@ genometools (1.5.7-3) unstable; urgency=low * d/control: remove obsolete dependency on libncurses5 -Closes: #804576 +Closes: #804576 -- Sascha Steinbiss

[med-svn] r20686 - trunk/packages/genometools/trunk/debian

2015-12-08 Thread Sascha Steinbiss
Author: sascha-guest Date: 2015-12-08 21:35:05 + (Tue, 08 Dec 2015) New Revision: 20686 Modified: trunk/packages/genometools/trunk/debian/control Log: remove architectures Modified: trunk/packages/genometools/trunk/debian/control ===

[med-svn] r20687 - trunk/packages/genometools/trunk/debian

2015-12-08 Thread Sascha Steinbiss
Author: sascha-guest Date: 2015-12-08 21:39:19 + (Tue, 08 Dec 2015) New Revision: 20687 Modified: trunk/packages/genometools/trunk/debian/control Log: add back x32 Modified: trunk/packages/genometools/trunk/debian/control ===

[med-svn] r20688 - trunk/packages/genometools/trunk/debian

2015-12-08 Thread Sascha Steinbiss
Author: sascha-guest Date: 2015-12-08 21:39:50 + (Tue, 08 Dec 2015) New Revision: 20688 Modified: trunk/packages/genometools/trunk/debian/control Log: remove stray colon Modified: trunk/packages/genometools/trunk/debian/control =

[med-svn] r20691 - trunk/packages/genometools/trunk/debian

2015-12-08 Thread Sascha Steinbiss
Author: sascha-guest Date: 2015-12-08 21:57:59 + (Tue, 08 Dec 2015) New Revision: 20691 Modified: trunk/packages/genometools/trunk/debian/control Log: use single line architecture definition Modified: trunk/packages/genometools/trunk/debian/control

[med-svn] r20692 - trunk/packages/genometools/trunk/debian

2015-12-08 Thread Sascha Steinbiss
Author: sascha-guest Date: 2015-12-09 00:54:50 + (Wed, 09 Dec 2015) New Revision: 20692 Modified: trunk/packages/genometools/trunk/debian/rules Log: extract x32 status correctly Modified: trunk/packages/genometools/trunk/debian/rules ===

[med-svn] r20693 - trunk/packages/genometools/trunk/debian

2015-12-08 Thread Sascha Steinbiss
Author: sascha-guest Date: 2015-12-09 00:55:09 + (Wed, 09 Dec 2015) New Revision: 20693 Modified: trunk/packages/genometools/trunk/debian/control Log: add back mips64el Modified: trunk/packages/genometools/trunk/debian/control ==

[med-svn] r20701 - trunk/packages/genometools/trunk/debian

2015-12-09 Thread Sascha Steinbiss
removed my mistake. + * Fix detection of x32 build + + -- Sascha Steinbiss Wed, 09 Dec 2015 22:20:47 + + genometools (1.5.7-5) unstable; urgency=medium * Try to load correct renamed .so file in Python bindings ___ debian-med-commit mailing list

[med-svn] r20747 - in trunk/packages/ltrsift/trunk/debian: . patches

2015-12-12 Thread Sascha Steinbiss
Packaging Team +Uploaders: Sascha Steinbiss Section: science Priority: optional -Maintainer: Debian Med Packaging Team -Uploaders: Sascha Steinbiss -Build-Depends: debhelper (>= 9), libgenometools0-dev (>= 1.4.2), libgtk2.0-dev, - libglib2.0-dev +Build-Depends: debhelper

[med-svn] r20746 - in trunk/packages/ltrsift/trunk/debian: . patches upstream

2015-12-12 Thread Sascha Steinbiss
file order for build + * fix Metadata-Screenshots + * fix build on x32 + + -- Sascha Steinbiss Sat, 12 Dec 2015 09:38:35 + + ltrsift (1.0.2-4) unstable; urgency=low * remove menu file - * remove timestamp from example .gz + * remove timestamp from example .gz -- Sascha Steinbiss

[med-svn] r20748 - trunk/packages/genometools/trunk/debian

2015-12-12 Thread Sascha Steinbiss
ion reproducibly + + -- Sascha Steinbiss Sat, 12 Dec 2015 19:13:40 + + genometools (1.5.7-6) unstable; urgency=medium * Reintroduce mips64el which was removed my mistake. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.

[med-svn] r20749 - in trunk/packages/genometools/trunk/debian: . patches

2015-12-12 Thread Sascha Steinbiss
Author: sascha-guest Date: 2015-12-12 19:16:41 + (Sat, 12 Dec 2015) New Revision: 20749 Added: trunk/packages/genometools/trunk/debian/patches/remove_png_timestamps Modified: trunk/packages/genometools/trunk/debian/control trunk/packages/genometools/trunk/debian/patches/adding_soname

[med-svn] [snpomatic] branch master created (now 849e1c8)

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch master in repository snpomatic. at 849e1c8 add ITP# This branch includes the following new commits: new 662e5b7 Imported Upstream version 0.0.20151015 new dc7c4

[med-svn] [snpomatic] 02/15: add debian dir

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository snpomatic. commit dc7c4d927bafee104de56cb673a8576118f28999 Author: Sascha Steinbiss Date: Sat Dec 12 20:26:37 2015 + add debian dir --- debian/changelog

[med-svn] [snpomatic] 03/15: override install rule

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository snpomatic. commit f08bc8316d72555d46fd52d1c3a122cb2a9f7f69 Author: Sascha Steinbiss Date: Sat Dec 12 20:33:45 2015 + override install rule --- debian/rules

[med-svn] [snpomatic] 04/15: add manpage sources

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository snpomatic. commit c9e917f53a57ea14e214dd5f24a5b4f394133cdf Author: Sascha Steinbiss Date: Sat Dec 12 21:09:00 2015 + add manpage sources --- debian

[med-svn] [snpomatic] 05/15: man page building

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository snpomatic. commit 0bdbb8174c0ca36f32f87161c1fb7fc8a5ecba45 Author: Sascha Steinbiss Date: Sat Dec 12 21:10:03 2015 + man page building --- debian/control

[med-svn] [snpomatic] 06/15: correct package name for ronn

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository snpomatic. commit 5744ec6cf1d52153e3146970574448b703b816a8 Author: Sascha Steinbiss Date: Sat Dec 12 21:10:45 2015 + correct package name for ronn

[med-svn] [snpomatic] 11/15: complete hardening

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository snpomatic. commit 21c5c713d4b9fcae628b6e4de6ed24cd8413b105 Author: Sascha Steinbiss Date: Sat Dec 12 21:39:19 2015 + complete hardening --- debian/patches

[med-svn] [snpomatic] 09/15: add hardening, build all binaries

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository snpomatic. commit 5801febdd11d5a181efdfa24e7c86ea0b4612c73 Author: Sascha Steinbiss Date: Sat Dec 12 21:27:57 2015 + add hardening, build all binaries

[med-svn] [snpomatic] 07/15: fix man page building

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository snpomatic. commit b91e82f4cd10663f43220a1df7c3dfaf7ad35a8d Author: Sascha Steinbiss Date: Sat Dec 12 21:15:17 2015 + fix man page building --- debian/rules

[med-svn] [snpomatic] 10/15: add documentation

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository snpomatic. commit e57d341e557631c48e5ca6a16ad5699db83fad51 Author: Sascha Steinbiss Date: Sat Dec 12 21:39:05 2015 + add documentation --- debian/control

[med-svn] [snpomatic] 12/15: cme fix dpkg

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository snpomatic. commit 413cbc50a879be609245bc108b47899d4c4cf7eb Author: Sascha Steinbiss Date: Sat Dec 12 21:42:13 2015 + cme fix dpkg --- debian/patches

[med-svn] [snpomatic] 14/15: add upstream metadata reference

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository snpomatic. commit 150c100880e268bb9cba56f577b07da7b0268f04 Author: Sascha Steinbiss Date: Sat Dec 12 21:55:43 2015 + add upstream metadata reference

[med-svn] [snpomatic] 08/15: add patches

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository snpomatic. commit d0e4a229af2bc0778ca35b6384503e61bab68784 Author: Sascha Steinbiss Date: Sat Dec 12 21:18:55 2015 + add patches --- debian/patches

[med-svn] [snpomatic] 13/15: adjust Vcs-Browser

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository snpomatic. commit 5beff3cb10a50adad0b81befecc3f1eecdfcdbf0 Author: Sascha Steinbiss Date: Sat Dec 12 21:55:32 2015 + adjust Vcs-Browser --- debian/control

[med-svn] [snpomatic] branch pristine-tar created (now 34894c5)

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch pristine-tar in repository snpomatic. at 34894c5 pristine-tar data for snpomatic_0.0.20151015.orig.tar.bz2 This branch includes the following new commits: new 34894c5 p

[med-svn] [snpomatic] 15/15: add ITP#

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository snpomatic. commit 849e1c87270ac0dde1f9d38a2f2054d2c3f6d2cf Author: Sascha Steinbiss Date: Sat Dec 12 21:56:29 2015 + add ITP# --- debian/changelog | 2 +- 1

[med-svn] [snpomatic] annotated tag upstream/0.0.20151015 created (now 01ce2df)

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to annotated tag upstream/0.0.20151015 in repository snpomatic. at 01ce2df (tag) tagging 662e5b7b774797ea074f0266aa37749a91f31200 (commit) tagged by Sascha Steinbiss on Sat

[med-svn] [snpomatic] 01/01: pristine-tar data for snpomatic_0.0.20151015.orig.tar.bz2

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch pristine-tar in repository snpomatic. commit 34894c56f1bd218266b4e6d1455b11dd009079a4 Author: Sascha Steinbiss Date: Sat Dec 12 20:20:16 2015 + pristine-tar data for

[med-svn] [snpomatic] branch upstream created (now 662e5b7)

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch upstream in repository snpomatic. at 662e5b7 Imported Upstream version 0.0.20151015 No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on

[med-svn] [libtabixpp] 02/02: remove unneeded dependency

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository libtabixpp. commit 6008d37b3c77669779ea6690db072c14a989e517 Author: Sascha Steinbiss Date: Sun Dec 13 03:17:31 2015 + remove unneeded dependency --- debian

[med-svn] [libtabixpp] branch master updated (457e505 -> 6008d37)

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch master in repository libtabixpp. from 457e505 flesh out package a bit new d674d23 add tests, finish building as a shlib new 6008d37 remove unneeded dependency Th

[med-svn] [libtabixpp] 01/02: add tests, finish building as a shlib

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository libtabixpp. commit d674d23b996eb07c8bda2b8b6125366ed08b2d7e Author: Sascha Steinbiss Date: Sun Dec 13 03:13:27 2015 + add tests, finish building as a shlib

[med-svn] [libtabixpp] 01/01: install into correct directory

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository libtabixpp. commit b8a6cb71f561c8d68ebdd1233d140168907ef1f8 Author: Sascha Steinbiss Date: Sun Dec 13 03:22:12 2015 + install into correct directory

[med-svn] [libtabixpp] branch master updated (6008d37 -> b8a6cb7)

2015-12-12 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch master in repository libtabixpp. from 6008d37 remove unneeded dependency new b8a6cb7 install into correct directory The 1 revisions listed above as "new" are entirely new

[med-svn] [snpomatic] 01/01: add README.source

2015-12-13 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository snpomatic. commit 025fae7448381d4420e29e109a533c6315ef Author: Sascha Steinbiss Date: Sun Dec 13 13:38:27 2015 + add README.source --- debian

[med-svn] [snpomatic] branch master updated (849e1c8 -> 025f111)

2015-12-13 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch master in repository snpomatic. from 849e1c8 add ITP# new 025f111 add README.source The 1 revisions listed above as "new" are entirely new to this repository and will be d

[med-svn] [reapr] branch master created (now 6e4e21e)

2015-12-13 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch master in repository reapr. at 6e4e21e add README.debian This branch includes the following new commits: new bb85a15 Imported Upstream version 1.0.18+dfsg new 3

[med-svn] [reapr] branch pristine-tar created (now dc70575)

2015-12-13 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch pristine-tar in repository reapr. at dc70575 pristine-tar data for reapr_1.0.18+dfsg.orig.tar.gz This branch includes the following new commits: new dc70575 pristine-ta

[med-svn] [reapr] annotated tag upstream/1.0.18+dfsg created (now c426108)

2015-12-13 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to annotated tag upstream/1.0.18+dfsg in repository reapr. at c426108 (tag) tagging bb85a15019796819770544938adb0731286734b8 (commit) tagged by Sascha Steinbiss on Sun Dec 13

[med-svn] [reapr] 01/01: pristine-tar data for reapr_1.0.18+dfsg.orig.tar.gz

2015-12-13 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch pristine-tar in repository reapr. commit dc7057522d90b8375300c944b6d8e55194ddea02 Author: Sascha Steinbiss Date: Sun Dec 13 13:25:19 2015 + pristine-tar data for reapr_1.0.18

[med-svn] [reapr] 03/05: cme fix dpkg

2015-12-13 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository reapr. commit 6ceb6f24b72888b44c6b012a7f4cc0718ffe4d31 Author: Sascha Steinbiss Date: Sun Dec 13 13:26:46 2015 + cme fix dpkg --- debian/patches/hardening

[med-svn] [reapr] 04/05: make installation more in line with the original approach

2015-12-13 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository reapr. commit 8a014aa92c6910d4b0e36bb3d42044aee57cae02 Author: Sascha Steinbiss Date: Sun Dec 13 18:42:18 2015 + make installation more in line with the

[med-svn] [reapr] 05/05: add README.debian

2015-12-13 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository reapr. commit 6e4e21e727555073a80d0370db12ddd3107d9978 Author: Sascha Steinbiss Date: Sun Dec 13 18:44:29 2015 + add README.debian --- debian/README.debian

[med-svn] [reapr] branch upstream created (now bb85a15)

2015-12-13 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch upstream in repository reapr. at bb85a15 Imported Upstream version 1.0.18+dfsg No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on /srv/

[med-svn] [reapr] 02/05: add debian dir

2015-12-13 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository reapr. commit 3239de86fe1449ecd3213977174e3b53ab55a70e Author: Sascha Steinbiss Date: Sun Dec 13 13:26:33 2015 + add debian dir --- debian/changelog

[med-svn] [reapr] 02/02: include all built executables

2015-12-13 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository reapr. commit e4112e3fd62910811f8f0fb298443784a89d5fbb Author: Sascha Steinbiss Date: Sun Dec 13 22:11:09 2015 + include all built executables --- debian

[med-svn] [reapr] branch master updated (6e4e21e -> e4112e3)

2015-12-13 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch master in repository reapr. from 6e4e21e add README.debian new 39b9db9 correct paths to tabix/bgzip new e4112e3 include all built executables The 2 revisions lis

[med-svn] [reapr] 01/02: correct paths to tabix/bgzip

2015-12-13 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository reapr. commit 39b9db9336cbcc2ba3402af4579fa5d1c7ad5aed Author: Sascha Steinbiss Date: Sun Dec 13 19:35:13 2015 + correct paths to tabix/bgzip --- debian

[med-svn] [reapr] 01/01: update README with samtools dep news

2015-12-14 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository reapr. commit 7839125e4ca0b70f78fc06b0e2e16d274f2599d1 Author: Sascha Steinbiss Date: Mon Dec 14 13:28:13 2015 + update README with samtools dep news

[med-svn] [reapr] branch master updated (e4112e3 -> 7839125)

2015-12-14 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch master in repository reapr. from e4112e3 include all built executables new 7839125 update README with samtools dep news The 1 revisions listed above as "new" are entirely

[med-svn] [snpomatic] branch master updated (025f111 -> e640f5f)

2015-12-14 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch master in repository snpomatic. from 025f111 add README.source new e640f5f use common locale for reproducibility The 1 revisions listed above as "new" are entirely new to

[med-svn] [snpomatic] 01/01: use common locale for reproducibility

2015-12-14 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository snpomatic. commit e640f5fb1f5d30b4fa05500c0f879e295d22e5b7 Author: Sascha Steinbiss Date: Mon Dec 14 14:44:36 2015 + use common locale for reproducibility

[med-svn] [snpomatic] 01/01: edit upstream name

2015-12-14 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository snpomatic. commit 8d065d635316bc44b35f070ae74549b0300c4255 Author: Sascha Steinbiss Date: Mon Dec 14 15:04:38 2015 + edit upstream name --- debian/copyright

[med-svn] [snpomatic] branch master updated (e640f5f -> 8d065d6)

2015-12-14 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a change to branch master in repository snpomatic. from e640f5f use common locale for reproducibility new 8d065d6 edit upstream name The 1 revisions listed above as "new" are entirely new to

[med-svn] [snpomatic] 01/01: add patch headers

2015-12-14 Thread Sascha Steinbiss
This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository snpomatic. commit e17e32898587300a22db5ea003eaf43563a4387b Author: Sascha Steinbiss Date: Mon Dec 14 15:20:55 2015 + add patch headers --- debian/patches

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