Re: trouble with snakemake having glpk-utils installed

2021-03-23 Thread patrice . duroux
Hi, I found that it is python3-pulp that calls glpsol provided by glpk- utils: https://sources.debian.org/src/python-pulp/1.6.0+dfsg1-5/src/pulp/solvers.py/?hl=100#L100 It's strange that the python3-pulp package didn't at least suggest some of these tools because tracking my issue using apt

trouble with snakemake having glpk-utils installed

2021-03-22 Thread Patrice Duroux
Hi, With a very simple Snakefile test case like this: rule test: shell: 'echo "Hello world!"' here is the output got with glpk-utils installed (sagemath requires it on this system): $ snakemake -j1 Building DAG of jobs... Using shell: /bin/bash Provided cores: 1 (use --cores to

Re: Re: small remark on packaging consistency

2019-12-11 Thread Patrice Duroux
Hi Julien, For the PKG-INFO file I just found it inside the .tar.gz available here where I am checking Python module: https://pypi.org/project/testpath/#files but may be I am wrong to check such a source. This repository is may be adding it then. Otherwise sure the new package is much better

small remark on packaging consistency

2019-12-10 Thread Patrice Duroux
Hi DMPT, Two tiny remarks related to the recent python3-testpath upgrade to 0.4.4+dfsg-1. 1. Two open bugs were almost the same (or at least to me): #945214 assigned to python3-pip and reassigned to python3-testpath on Sun, 08 Dec 2019 12:45:05 GMT and #945887 assigned to jupyter-notebook