Re: Enabling Python bindings for jellyfish

2016-01-01 Thread Andreas Tille
Hi Guillaume, On Thu, Dec 31, 2015 at 06:24:57PM -0500, Guillaume Marcais wrote: > if I am attached to the name Jellyfish for the main software itself, the > script bindings have seen little use (I believe) up to now. Renaming python > module to dna_jellyfish, bio_jellyfish, or some other suggesti

Re: Enabling Python bindings for jellyfish

2015-12-31 Thread Guillaume Marcais
On Thu, Dec 31, 2015 at 3:23 PM, Andreas Tille wrote: > Hi Guillaume, > > when Diego intended to package python-jellyfish a discussion about the > duplicate name came up. I even became aware that your jellyfish code > provides Python bindings and I intend to provide these as Debian package > as

Re: Enabling Python bindings for jellyfish

2015-12-31 Thread Andreas Tille
Hi Guillaume, when Diego intended to package python-jellyfish a discussion about the duplicate name came up. I even became aware that your jellyfish code provides Python bindings and I intend to provide these as Debian package as well. This would lead to a conflict to the completely unrelated mu

Re: Enabling Python bindings for jellyfish

2015-12-31 Thread Diego M. Rodriguez
> That bit of policy doesn't officially kick in yet since these aren't both in > the > archive yet. The policy is about consensus finding and not winning and > losing. > That's why I recommended discussing with the upstreams (and hopefully getting > them in direct communication). Thanks for

Re: Enabling Python bindings for jellyfish

2015-12-31 Thread Scott Kitterman
On Thursday, December 31, 2015 06:32:43 PM Diego M. Rodriguez wrote: > On Tue, Dec 29, 2015 at 02:07:05PM -0500, Paul Tagliamonte wrote: > > On Tue, Dec 29, 2015 at 1:24 PM, Diego M. Rodriguez > > > > wrote: > > > On Tue, Dec 29, 2015 at 12:56:20PM -0500, Scott Kitterman wrote: > > > > I think the

Re: Enabling Python bindings for jellyfish

2015-12-31 Thread Diego M. Rodriguez
On Tue, Dec 29, 2015 at 02:07:05PM -0500, Paul Tagliamonte wrote: > That won't solve the problem, since both will provide the python module > jellyfish Fair point indeed, and I fully agree that ideally the problem should be solved at the python module level. I'm wondering if you or other senior,

Re: Enabling Python bindings for jellyfish

2015-12-29 Thread Andreas Tille
On Tue, Dec 29, 2015 at 02:07:05PM -0500, Paul Tagliamonte wrote: > That won't solve the problem, since both will provide the python module > jellyfish I agree. BTW, I just became aware about the Python bindings of the DNA Jellyfish by discussing with Diego. :-) I'm not in a hurry with uploading

Re: Enabling Python bindings for jellyfish

2015-12-29 Thread Scott Kitterman
Agreed. I'll leave it to the maintainer/ITP owner to sort things out. Scott K On Tuesday, December 29, 2015 12:59:17 PM Paul Tagliamonte wrote: > In the meantime, I suggest we both avoid uploading any python*-jellyfish > packages > > Paul > > On Tue, Dec 29, 2015 at 12:56 PM, Scott Kitterman

Re: Enabling Python bindings for jellyfish

2015-12-29 Thread Paul Tagliamonte
That won't solve the problem, since both will provide the python module jellyfish On Tue, Dec 29, 2015 at 1:24 PM, Diego M. Rodriguez wrote: > On Tue, Dec 29, 2015 at 12:56:20PM -0500, Scott Kitterman wrote: > > I think the respective maintainers should talk and then discuss with > their > > ups

Re: Enabling Python bindings for jellyfish

2015-12-29 Thread Diego M. Rodriguez
On Tue, Dec 29, 2015 at 12:56:20PM -0500, Scott Kitterman wrote: > I think the respective maintainers should talk and then discuss with their > upstreams as the collision potential isn't just in Debian. I'm chiming in as the (prospective) maintainer of the ITP python-jellyfish package, just to no

Re: Enabling Python bindings for jellyfish

2015-12-29 Thread Paul Tagliamonte
In the meantime, I suggest we both avoid uploading any python*-jellyfish packages Paul On Tue, Dec 29, 2015 at 12:56 PM, Scott Kitterman wrote: > I think the respective maintainers should talk and then discuss with their > upstreams as the collision potential isn't just in Debian. > > Scott K

Re: Enabling Python bindings for jellyfish

2015-12-29 Thread Scott Kitterman
I think the respective maintainers should talk and then discuss with their upstreams as the collision potential isn't just in Debian. Scott K On Tuesday, December 29, 2015 12:27:37 PM Paul Tagliamonte wrote: > Just FYI - there's a Python module called Jellyfish about to be uploaded; > can we res

Re: Enabling Python bindings for jellyfish

2015-12-29 Thread Paul Tagliamonte
Just FYI - there's a Python module called Jellyfish about to be uploaded; can we resolve the name collision early? https://pypi.python.org/pypi/jellyfish Paul On Tue, Dec 29, 2015 at 12:06 PM, Scott Kitterman wrote: > On Tuesday, December 29, 2015 11:52:07 AM Scott Kitterman wrote: > > On Tues

Re: Enabling Python bindings for jellyfish

2015-12-29 Thread Scott Kitterman
On Tuesday, December 29, 2015 11:52:07 AM Scott Kitterman wrote: > On Tuesday, December 29, 2015 12:30:14 AM Andreas Tille wrote: > > Hi, > > > > I realised that for jellyfish[1] Python bindings can be activated. I > > tried to do so and configuring and building works fine - but I have no > > ide

Re: Enabling Python bindings for jellyfish

2015-12-29 Thread Scott Kitterman
On Tuesday, December 29, 2015 12:30:14 AM Andreas Tille wrote: > Hi, > > I realised that for jellyfish[1] Python bindings can be activated. I > tried to do so and configuring and building works fine - but I have no > idea how to sensibly install the files into the python-jellyfish > package. Any

Enabling Python bindings for jellyfish

2015-12-28 Thread Andreas Tille
Hi, I realised that for jellyfish[1] Python bindings can be activated. I tried to do so and configuring and building works fine - but I have no idea how to sensibly install the files into the python-jellyfish package. Any idea how to call swig/python/setup.py or do something else to install the