Your message dated Sun, 08 Jul 2018 16:51:59 +0000
with message-id <e1fccul-0008ge...@fasolo.debian.org>
and subject line Bug#898325: fixed in getdp 2.11.3+dfsg1-2
has caused the Debian Bug report #898325,
regarding getdp: FTBFS against PETSc 3.9
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
898325: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=898325
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: getdp
Version: 2.11.3+dfsg1-1
Severity: normal
getdp now fails to build against PETSc, from petsc 3.9.
The error message is:
[ 60%] Building CXX object CMakeFiles/getdp.dir/Kernel/SolvingAnalyse.cpp.o
make[4]: Leaving directory
'/home/drew/projects/test/getdp-2.11.3+dfsg1/debian/build/petsc'
make[4]: Entering directory
'/home/drew/projects/test/getdp-2.11.3+dfsg1/debian/build/petsc'
/usr/bin/mpicxx -I/home/drew/projects/test/getdp-2.11.3+dfsg1/Common
-I/home/drew/projects/test/getdp-2.11.3+dfsg1/Interface
-I/home/drew/projects/test/getdp-2.11.3+dfsg1/Kernel
-I/home/drew/projects/test/getdp-2.11.3+dfsg1/Numeric
-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi
-I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/slepc
-I/usr/include/petsc -I/usr/include/python3.6m
-I/home/drew/projects/test/getdp-2.11.3+dfsg1/debian/build/petsc/Common -g -O2
-fdebug-prefix-map=/home/drew/projects/test/getdp-2.11.3+dfsg1=.
-fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic
-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-misleading-indentation -o
CMakeFiles/getdp.dir/Kernel/LinAlg_PETSC.cpp.o -c
/home/drew/projects/test/getdp-2.11.3+dfsg1/Kernel/LinAlg_PETSC.cpp
/home/drew/projects/test/getdp-2.11.3+dfsg1/Kernel/LinAlg_PETSC.cpp: In
function ‘void _solve(gMatrix*, gVector*, gSolver*, gVector*, int, int)’:
/home/drew/projects/test/getdp-2.11.3+dfsg1/Kernel/LinAlg_PETSC.cpp:1293:10:
error: ‘PCFactorSetMatSolverPackage’ was not declared in this scope
_try(PCFactorSetMatSolverPackage(pc, "mumps"));
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/drew/projects/test/getdp-2.11.3+dfsg1/Kernel/LinAlg_PETSC.cpp:1293:10:
note: suggested alternative: ‘PCFactorSetMatSolverType’
_try(PCFactorSetMatSolverPackage(pc, "mumps"));
^~~~~~~~~~~~~~~~~~~~~~~~~~~
PCFactorSetMatSolverType
/home/drew/projects/test/getdp-2.11.3+dfsg1/Kernel/LinAlg_PETSC.cpp:1328:13:
error: ‘MatSolverPackage’ does not name a type; did you mean ‘MatSolverType’?
const MatSolverPackage stype;
^~~~~~~~~~~~~~~~
MatSolverType
... etc
This happens because of a change in API in PETSc 3.9.
There is a tentative patch upstream at
https://gitlab.onelab.info/getdp/getdp/commit/8610fc15c426b322bc37f52796e7b3ca65a2d2d3
petsc 3.9 is currently in experimental. This bug will become serious
once we upload it to unstable.
-- System Information:
Debian Release: buster/sid
APT prefers unstable
APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 4.16.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_AU.UTF-8, LC_CTYPE=en_AU.UTF-8 (charmap=UTF-8),
LANGUAGE=en_AU.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
--- End Message ---
--- Begin Message ---
Source: getdp
Source-Version: 2.11.3+dfsg1-2
We believe that the bug you reported is fixed in the latest version of
getdp, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 898...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Drew Parsons <dpars...@debian.org> (supplier of updated getdp package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 09 Jul 2018 00:18:57 +0800
Source: getdp
Binary: getdp getdp-sparskit
Architecture: source
Version: 2.11.3+dfsg1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Drew Parsons <dpars...@debian.org>
Description:
getdp - general environment for the treatment of discrete problems
getdp-sparskit - general environment for the treatment of discrete problems
Closes: 898325
Changes:
getdp (2.11.3+dfsg1-2) unstable; urgency=medium
.
* Team upload.
* Debian patch link_fortran.patch: Ensure gfortran is always linked.
Linking gfortran to LAPACK gave variable results: it didn't get
added when built against ATLAS.
* Apply upstream patches 5f171b22 and 8610fc15 to enable build
against PETSc 3.9. Closes: #898325.
* Don't build an rpath into binaries (activate CMAKE_SKIP_RPATH)
* Standards-Version: 4.1.5
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--- End Message ---
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