Bug#889931: proj transition started, increasing severity to serious

2018-03-04 Thread Sebastiaan Couwenberg
severity 889931 serious severity 876934 serious severity 889936 serious thanks The proj transition (#891966) has started, these build failures are now RC. Kind Regards, Bas -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.

Re: hdfview 2.11 locks SWMR files

2018-02-19 Thread Sebastiaan Couwenberg
On 02/19/2018 10:08 AM, Jan Kotanski wrote: > is it possible to provide the h5clear tool in the hdf5-tools package for > stretch, (e.g. backports). > Since hdfview brakes SWMR files it would be good to have a script which fix > them back. h5clear is not provided by hdf5-tools in testing/unstable

Bug#885971: libgdal20 depends on version 1:8.300.1+dfsg-1 of libarmadillo8

2018-01-03 Thread Sebastiaan Couwenberg
reassign 885971 src:armadillo retitle 885971 Add version information to libarmadillo affects 885971 src:melt src:gdal thanks Hi Kingsley, On Sun, 31 Dec 2017 22:10:52 -0800 "Kingsley G. Morse Jr." wrote: > I'm happy to report that upgrading the package > named > > libarmadillo8 > > fro

Bug#853658: Forwarded upstream

2017-08-18 Thread Sebastiaan Couwenberg
On Mon, 7 Aug 2017 08:49:19 +0100 Ghislain Vaillant wrote: > control: forwarded -1 https://github.com/Shark-ML/Shark/issues/194 Instead of packaging a snapshot as suggested by upstream, I suggest to explicitly build the package with GCC 6 (as per the attached patch)( until the new upstream release

Bug#840788: vtk6: Change libmysqlclient-dev build dependency to default-libmysqlclient-dev

2016-10-15 Thread Sebastiaan Couwenberg
On Sat, 15 Oct 2016 13:36:31 +0200 Andreas Beckmann wrote: > On Fri, 14 Oct 2016 23:44:15 +0200 Bas Couwenberg > wrote: > > Please change the libmysqlclient-dev build dependency to > > default-libmysqlclient-dev. The vtk6 build dependencies are > > no longer installable now that libgdal-dev depend

Bug#835680: Patch for change in FindHDF5.cmake from CMake >= 3.6.0

2016-08-28 Thread Sebastiaan Couwenberg
Control: tags -1 upstream patch Hi, This is a common issue affecting all reverse dependencies of HDF5 using CMake. The recent update to CMake 3.6.x caused the failure because the HDF5_INCLUDE_DIR variable is no longer set by FindHDF5.cmake. HDF5_INCLUDE_DIR has been deprecated some time ag

Bug#829166: jhdf: FTBFS: dh_clean: Please specify the compatibility level in debian/compat

2016-07-01 Thread Sebastiaan Couwenberg
Control: tags -1 patch Please create the compat file as suggested, or add the attached one. It fixes the build failure. Kind Regards, Bas 7 -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debi

Re: Could Debian Perl team take over PDL?

2016-06-12 Thread Sebastiaan Couwenberg
On 06/03/2016 10:55 PM, Sebastiaan Couwenberg wrote: > On 06/03/2016 10:07 PM, Niko Tyni wrote: >> On Mon, May 30, 2016 at 12:02:32PM +0200, Andreas Tille wrote: >>> I've got a request from PDL upstream who fully correctly noticed that >>> PDL is not properly ma

Re: Could Debian Perl team take over PDL?

2016-06-03 Thread Sebastiaan Couwenberg
On 06/03/2016 10:07 PM, Niko Tyni wrote: > On Mon, May 30, 2016 at 12:02:32PM +0200, Andreas Tille wrote: >> I've got a request from PDL upstream who fully correctly noticed that >> PDL is not properly maintained inside Debian. Since I once did some >> ad-hoc fixes Upstream CCed me whether I could

etsf-io: FTBFS: cp: cannot stat './AUTHORS-XAUTHORS': No such file or directory

2016-05-20 Thread Sebastiaan Couwenberg
Control: tags -1 pending Hi Chris, I've prepared a new NMU to fix this issue, see the attached debdiff. I've uploaded it to DELAYED/10 Hopefully the maintainer will prepare a proper upload to acknowledge this and the preceding NMU. Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fi

Bug#799195: python-scientific: FTBFS during rebuild against netcdf 4.4.0

2016-04-10 Thread Sebastiaan Couwenberg
On Wed, 16 Sep 2015 18:23:47 + PICCA Frederic-Emmanuel wrote: > python-scientific is for now not compatible with numpy 1.9. python-scientific and libvtk5.8 are keeping the old netcdf (1:4.1.3-7.2) packages in unstable and hindering testing migration of every subsequent revision. python-scient

Bug#807237: thepeg: Update build dependencies for GSL 2.x

2015-12-16 Thread Sebastiaan Couwenberg
On 06-12-15 16:30, Bas Couwenberg wrote: > Please note that rivet (#807224) needs to be updated for GSL 2, > before thepeg can be rebuilt with GSL 2. > > Having thepeg rebuilt with GSL 2 will unblock the rebuild for herwig++. With the upload of rivet (1.8.3-1.3) to unstable two days ago, it no lo

Bug#807232: 3depict: Update build dependencies for GSL 2.x

2015-12-07 Thread Sebastiaan Couwenberg
On 06-12-15 16:13, Bas Couwenberg wrote: > Please note that mathgl (#805801) needs to be updated for GSL 2, > before 3depict can be rebuilt with GSL 2. mathgl has been updated for GSL, removing the blocker for this issue. Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 81

Bug#807206: hkl: Update build dependencies for GSL 2.x

2015-12-06 Thread Sebastiaan Couwenberg
reopen 807206 thanks Hi Michael, You closed the wrong bugreport (807206 instead of 807026), so I'm reopening this one. Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1 -- debian-science-maintainers mailing list debian-s

Bug#807206: hkl: Update build dependencies for GSL 2.x

2015-12-06 Thread Sebastiaan Couwenberg
reopen 807206 thanks Hi Michael, You closed the wrong bugreport (807206 instead of 807026), so I'm reopening this one. Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1 -- debian-science-maintainers mailing list debian-s

Bug#805841: qtiplot: Fails to build with GSL 2

2015-12-06 Thread Sebastiaan Couwenberg
reopen 805841 retitle 805841 qtiplot: Update build dependencies for GSL 2 severity 805841 normal found 805841 qtiplot/0.9.8.9-11 qtiplot/0.9.8.9-12 block 805841 by 806835 thanks Hi Anton, Thanks for fixing the GSL 2 support in qtiplot, unfortunately the patch for GSL 2 support is not sufficient t

Bug#805801: mathgl: Fails to build with GSL 2

2015-12-03 Thread Sebastiaan Couwenberg
Control: tags -1 patch fixed-upstream On 22-11-15 18:36, Bas Couwenberg wrote: > Your package fails to build with GSL 2: > > /tmp/buildd/mathgl-2.3.3/src/fit.cpp: In function 'mreal > mgl_fit_base(mglFitData&, mreal*)': > /tmp/buildd/mathgl-2.3.3/src/fit.cpp:196:25: error: 'struct > gsl_multi

Bug#805829: r-cran-gsl: Fails to build with GSL 2

2015-12-03 Thread Sebastiaan Couwenberg
Control: tags -1 patch fixed-upstream Hi Andreas, On 24-11-15 22:14, Andreas Tille wrote: > thanks for working on the libgsl migration. I commited a patch to SVN[1] > to circumvent the check by configure but that's not sufficient to do the > migration. The build fails with > > In file included

Bug#791173: libstxxl: library transition may be needed when GCC 5 is the default

2015-08-23 Thread Sebastiaan Couwenberg
On 23-08-15 19:59, Anton Gladky wrote: > Thanks, Bas. Agreed and accepted. Will upload in a > few moments. Thanks. I'll finish up the new osrm revision to close its RC bug after libstxxl hits the mirrors. > Feel free to join debian-science group on Alioth, I will > accept your request, if you wan

Bug#791173: libstxxl: library transition may be needed when GCC 5 is the default

2015-08-23 Thread Sebastiaan Couwenberg
On 23-08-15 19:15, Simon McVittie wrote: > On 23/08/15 16:10, Sebastiaan Couwenberg wrote: >> On 23-08-15 16:59, Simon McVittie wrote: >>> The "SONAME bump" option was only really meant to be taken if the library >>> had an upstream SONAME bump pending anyway

Bug#791173: libstxxl: library transition may be needed when GCC 5 is the default

2015-08-23 Thread Sebastiaan Couwenberg
On 23-08-15 16:59, Simon McVittie wrote: > The "SONAME bump" option was only really meant to be taken if the library > had an upstream SONAME bump pending anyway (for instance icu and boost > went this route). If there is not a SONAME change already in the pipeline, > you should do the "v5" rename

Bug#791173: libstxxl: library transition may be needed when GCC 5 is the default

2015-08-22 Thread Sebastiaan Couwenberg
Control: reopen -1 On Tue, 11 Aug 2015 09:03:51 +0100 Simon McVittie wrote: > On Fri, 03 Jul 2015 at 13:12:19 +, Matthias Klose wrote: > > - If there are no reverse dependencies, it should be the package > >maintainers decision if a transition is needed. However this might > >break s

Bug#793823: etsf-io: ftbfs with GCC-5

2015-08-19 Thread Sebastiaan Couwenberg
Control: tags -1 pending On Sun, 16 Aug 2015 14:16:34 +0300 Antti Järvinen wrote: > By obtaining source of netcfg, compiling and installing that in SID > made this package to successfully build too so this package is not > errorneus and listed in > https://release.debian.org/transitions/html/auto-

Bug#788382: vtk6: FTBFS with latest netcdf (1:4.3.3) in experimental

2015-06-10 Thread Sebastiaan Couwenberg
On 06/10/2015 10:13 PM, Ross Gammon wrote: > -- Failed to find NetCDF interface for CXX The netcdf-cxx (and netcdf-fortran) package is still in NEW, so this is expected. I suggest to close this bugreport for now. If vtk6 also FTBFS with all new netcdf packages it can be reopened. Kind Regards,