Source: mmtk
Version: 2.7.9-1
Severity: serious
Justification: fails to build from source
User: reproducible-bui...@lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org
Dear Maintainer,
mmtk fails to build from source in unstable/amd64 as python-numpy 1.9
removed oldnumeric:
[..]
dh_auto_build
python setup.py build --force
Traceback (most recent call last):
File "setup.py", line 66, in <module>
from Scientific import N
File "/usr/lib/python2.7/dist-packages/Scientific/N.py", line 6, in
<module>
from numpy.oldnumeric import *
ImportError: No module named oldnumeric
dh_auto_build: python setup.py build --force returned exit code 1
debian/rules:34: recipe for target 'build' failed
make: *** [build] Error 1
dpkg-buildpackage: error: debian/rules build gave error exit status 2
[..]
The full build log is attached or can be viewed here:
https://reproducible.debian.net/logs/unstable/amd64/mmtk_2.7.9-1.build1.log.gz
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` la...@debian.org / chris-lamb.co.uk
`-
I: using fakeroot in build.
I: pbuilder: network access will be disabled during build
I: Current time: Thu Sep 10 15:18:40 GMT+12 2015
I: pbuilder-time-stamp: 1441941520
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: creating local configuration
I: copying local configuration
I: mounting /proc filesystem
I: mounting /run/shm filesystem
I: mounting /dev/pts filesystem
I: Mounting /dev/shm
I: Mounting /sys
I: policy-rc.d already exists
I: Installing the build-deps
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-ma...@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by
pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper (>= 9), cython, libnetcdf-dev, python-all-dev, python-numpy,
python-netcdf, python-scientific, python-sphinx (>= 1.0.7+dfsg)
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in
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dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring
anyway as you requested:
pbuilder-satisfydepends-dummy depends on cython; however:
Package cython is not installed.
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The following NEW packages will be installed:
cython{a} docutils-common{a} fonts-font-awesome{a} fonts-lato{a}
hdf5-helpers{a} libblas-common{a} libblas3{a} libcurl3-gnutls{a}
libcurl4-gnutls-dev{a} libexpat1{a} libexpat1-dev{a} libgfortran3{a}
libgnutls-deb0-28{a} libgssapi-krb5-2{a} libhdf5-8{a} libhdf5-cpp-8{a}
libhdf5-dev{a} libhogweed4{a} libidn11{a} libjpeg-dev{a}
libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a}
libjs-modernizr{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a}
libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a}
libldap-2.4-2{a} libnetcdf-dev{a} libnetcdf7{a} libnetcdfc7{a}
libnettle6{a} libp11-kit0{a} libpython-all-dev{a} libpython-dev{a}
libpython-stdlib{a} libpython2.7{a} libpython2.7-dev{a}
libpython2.7-minimal{a} libpython2.7-stdlib{a} librtmp1{a} libsasl2-2{a}
libsasl2-modules-db{a} libssh2-1{a} libssl1.0.0{a} libtasn1-6{a}
mime-support{a} python{a} python-alabaster{a} python-all{a}
python-all-dev{a} python-babel{a} python-babel-localedata{a}
python-dev{a} python-docutils{a} python-jinja2{a} python-markupsafe{a}
python-minimal{a} python-netcdf{a} python-numpy{a}
python-pkg-resources{a} python-pygments{a} python-roman{a}
python-scientific{a} python-six{a} python-sphinx{a}
python-sphinx-rtd-theme{a} python-tz{a} python2.7{a} python2.7-dev{a}
python2.7-minimal{a} sgml-base{a} sphinx-common{a}
sphinx-rtd-theme-common{a} xml-core{a} zlib1g-dev{a}
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Unpacking libblas3 (1.2.20110419-10) ...
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Unpacking libcurl3-gnutls:amd64 (7.44.0-1) ...
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Selecting previously unselected package libhdf5-cpp-8:amd64.
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Unpacking python-sphinx (1.3.1-6) ...
Processing triggers for man-db (2.7.3-1) ...
Setting up libnettle6:amd64 (3.1.1-4) ...
Setting up libhogweed4:amd64 (3.1.1-4) ...
Setting up libp11-kit0:amd64 (0.23.1-3) ...
Setting up libtasn1-6:amd64 (4.5-2) ...
Setting up libgnutls-deb0-28:amd64 (3.3.17-1) ...
Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-13) ...
Setting up libsasl2-2:amd64 (2.1.26.dfsg1-13) ...
Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-1) ...
Setting up mime-support (3.59) ...
Setting up libexpat1:amd64 (2.1.0-7) ...
Setting up libssl1.0.0:amd64 (1.0.2d-1) ...
Setting up libpython2.7-stdlib:amd64 (2.7.10-3) ...
Setting up python2.7 (2.7.10-3) ...
Setting up libpython-stdlib:amd64 (2.7.9-1) ...
Setting up python (2.7.9-1) ...
Setting up fonts-lato (2.0-1) ...
Setting up libgfortran3:amd64 (5.2.1-16) ...
Setting up libpython2.7:amd64 (2.7.10-3) ...
Setting up libexpat1-dev:amd64 (2.1.0-7) ...
Setting up libpython2.7-dev:amd64 (2.7.10-3) ...
Setting up libssh2-1:amd64 (1.5.0-2+b1) ...
Setting up sgml-base (1.26+nmu4) ...
Setting up libkeyutils1:amd64 (1.5.9-7) ...
Setting up libkrb5support0:amd64 (1.13.2+dfsg-2) ...
Setting up libk5crypto3:amd64 (1.13.2+dfsg-2) ...
Setting up libkrb5-3:amd64 (1.13.2+dfsg-2) ...
Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-2) ...
Setting up libidn11:amd64 (1.32-1) ...
Setting up cython (0.22.1-2) ...
Setting up xml-core (0.13+nmu2) ...
Setting up fonts-font-awesome (4.3.0~dfsg-2) ...
Setting up hdf5-helpers (1.8.13+docs-15.1) ...
Setting up libblas-common (1.2.20110419-10) ...
Setting up libblas3 (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide
/usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up librtmp1:amd64 (2.4+20150115.gita107cef-1+b2) ...
Setting up libcurl3-gnutls:amd64 (7.44.0-1) ...
Setting up libcurl4-gnutls-dev:amd64 (7.44.0-1) ...
Setting up libhdf5-8:amd64 (1.8.13+docs-15.1) ...
Setting up libhdf5-cpp-8:amd64 (1.8.13+docs-15.1) ...
Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ...
Setting up libjpeg62-turbo:amd64 (1:1.4.1-2) ...
Setting up libjpeg62-turbo-dev:amd64 (1:1.4.1-2) ...
Setting up libjpeg-dev (1:1.4.1-2) ...
Setting up libhdf5-dev (1.8.13+docs-15.1) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc
to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libjs-jquery (1.11.3+dfsg-3) ...
Setting up libjs-underscore (1.7.0~dfsg-1) ...
Setting up libjs-sphinxdoc (1.3.1-6) ...
Setting up liblapack3 (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide
/usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libnetcdf7 (1:4.4.0~rc2-1) ...
Setting up libnetcdf-dev (1:4.4.0~rc2-1) ...
Setting up libnetcdfc7 (1:4.1.3-7.2) ...
Setting up libpython-dev:amd64 (2.7.9-1) ...
Setting up libpython-all-dev:amd64 (2.7.9-1) ...
Setting up python-all (2.7.9-1) ...
Setting up python2.7-dev (2.7.10-3) ...
Setting up python-dev (2.7.9-1) ...
Setting up python-all-dev (2.7.9-1) ...
Setting up python-babel-localedata (1.3+dfsg.1-5) ...
Setting up python-pkg-resources (18.3.1-1) ...
Setting up python-six (1.9.0-5) ...
Setting up python-tz (2012c+dfsg-0.1) ...
Setting up python-babel (1.3+dfsg.1-5) ...
update-alternatives: using /usr/bin/pybabel-python2 to provide /usr/bin/pybabel
(pybabel) in auto mode
Setting up python-roman (2.0.0-1) ...
Setting up python-markupsafe (0.23-2) ...
Setting up python-jinja2 (2.8-1) ...
Setting up python-numpy (1:1.9.2-2) ...
Setting up python-scientific (2.9.4-3) ...
Setting up python-netcdf (2.9.4-3) ...
Setting up python-pygments (2.0.1+dfsg-1.1) ...
Setting up libjs-modernizr (2.6.2+ds1-1) ...
Setting up sphinx-rtd-theme-common (0.1.8-2) ...
Setting up python-sphinx-rtd-theme (0.1.8-2) ...
Setting up sphinx-common (1.3.1-6) ...
Processing triggers for sgml-base (1.26+nmu4) ...
Setting up docutils-common (0.12+dfsg-1) ...
Processing triggers for sgml-base (1.26+nmu4) ...
Setting up python-docutils (0.12+dfsg-1) ...
update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to
provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to
provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to
provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to
provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to
provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using
/usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide
/usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to
provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to
provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to
provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to
provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to
provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python-alabaster (0.7.6-1) ...
Setting up python-sphinx (1.3.1-6) ...
Processing triggers for libc-bin (2.19-19) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
disorderfs is already the newest version.
fakeroot is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Copying source file
I: copying [mmtk_2.7.9-1.dsc]
I: copying [./mmtk_2.7.9.orig.tar.gz]
I: copying [./mmtk_2.7.9-1.debian.tar.gz]
I: Extracting source
gpgv: keyblock resource `/tmp/buildd/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sun Jun 16 00:36:17 2013 GMT+12 using DSA key ID A59B1171
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./mmtk_2.7.9-1.dsc
dpkg-source: info: extracting mmtk in mmtk-2.7.9
dpkg-source: info: unpacking mmtk_2.7.9.orig.tar.gz
dpkg-source: info: unpacking mmtk_2.7.9-1.debian.tar.gz
I: Building the package
I: Running cd tmp/buildd/*/ && env
PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" dpkg-buildpackage -us -uc -b
-rfakeroot
dpkg-buildpackage: source package mmtk
dpkg-buildpackage: source version 2.7.9-1
dpkg-buildpackage: source distribution unstable
dpkg-buildpackage: source changed by Picca Frédéric-Emmanuel
<pi...@debian.org>
dpkg-source --before-build mmtk-2.7.9
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
dh clean --with python2,sphinxdoc
dh_testdir
debian/rules override_dh_auto_clean
make[1]: Entering directory '/tmp/buildd/mmtk-2.7.9'
# remove the cpython generated files distributed by upstream
rm -f Src/MMTK_trajectory_action.c Src/MMTK_energy_term.c
Src/MMTK_trajectory_generator.c Src/MMTK_state_accessor.c Src/MMTK_restraints.c
# remove .pyc files
rm -f
# remove the doc
rm -rf build
make[1]: Leaving directory '/tmp/buildd/mmtk-2.7.9'
dh_clean
rm -f debian/python-mmtk.substvars
rm -f debian/python-mmtk.*.debhelper
rm -rf debian/python-mmtk/
rm -rf debian/.debhelper/
rm -f debian/*.debhelper.log
rm -f debian/files
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path
.\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \)
\)
rm -f *-stamp
debian/rules build
dh build --with python2,sphinxdoc
dh_testdir
dh_auto_configure
dh_auto_build
python setup.py build --force
Traceback (most recent call last):
File "setup.py", line 66, in <module>
from Scientific import N
File "/usr/lib/python2.7/dist-packages/Scientific/N.py", line 6, in <module>
from numpy.oldnumeric import *
ImportError: No module named oldnumeric
dh_auto_build: python setup.py build --force returned exit code 1
debian/rules:34: recipe for target 'build' failed
make: *** [build] Error 1
dpkg-buildpackage: error: debian/rules build gave error exit status 2
E: Failed autobuilding of package
I: unmounting /sys filesystem
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: cleaning the build env
I: removing directory /var/cache/pbuilder/build//6283 and its subdirectories
--
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