Your message dated Fri, 04 Dec 2015 09:28:31 +0000 with message-id <e1a4mfh-0007ok...@franck.debian.org> and subject line Bug#805829: fixed in r-cran-gsl 1.9-10.1-1 has caused the Debian Bug report #805829, regarding r-cran-gsl: Fails to build with GSL 2 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 805829: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=805829 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: r-cran-gsl Version: 1.9-10-1 Severity: important Tags: upstream Dear Maintainer, Your package fails to build with GSL 2: configure: error: Need GSL version >= 1.12 ERROR: configuration failed for package 'gsl' This needs to be fixed for the ongoing gsl transition (#804246). The full build log is attached, as is a patch to update the build dependencies for GSL 2 (changing libgsl0-dev to libgsl-dev). Kind Regards, BasI: using cowbuilder as pbuilder dpkg-checkbuilddeps: Unmet build dependencies: libgsl-dev W: Unmet build-dependency in source dpkg-buildpackage: source package r-cran-gsl dpkg-buildpackage: source version 1.9-10-1.1 dpkg-buildpackage: source distribution UNRELEASED dpkg-buildpackage: source changed by Bas Couwenberg <sebas...@debian.org> dpkg-source --before-build r-cran-gsl-1.9-10 dpkg-checkbuilddeps: Unmet build dependencies: libgsl-dev dpkg-buildpackage: warning: build dependencies/conflicts unsatisfied; aborting dpkg-buildpackage: warning: (Use -d flag to override.) dpkg-buildpackage: warning: this is currently a non-fatal warning with -S, but will probably become fatal in the future fakeroot debian/rules clean test -x debian/rules dh_clean if test -d src; then \ find src -regex ".*\.o" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status dpkg-source -b r-cran-gsl-1.9-10 dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: info: building r-cran-gsl using existing ./r-cran-gsl_1.9-10.orig.tar.gz dpkg-source: info: building r-cran-gsl in r-cran-gsl_1.9-10-1.1.debian.tar.xz dpkg-source: info: building r-cran-gsl in r-cran-gsl_1.9-10-1.1.dsc dpkg-genchanges -S >../r-cran-gsl_1.9-10-1.1_source.changes dpkg-genchanges: not including original source code in upload dpkg-source --after-build r-cran-gsl-1.9-10 dpkg-buildpackage: binary and diff upload (original source NOT included) -> Copying COW directory forking: rm -rf /var/cache/pbuilder/build//cow.29361 forking: cp -al /var/cache/pbuilder/base-sid.cow /var/cache/pbuilder/build//cow.29361 I: removed stale ilistfile /var/cache/pbuilder/build//cow.29361/.ilist forking: chroot /var/cache/pbuilder/build//cow.29361 cowdancer-ilistcreate /.ilist find . -xdev -path ./home -prune -o \( \( -type l -o -type f \) -a -links +1 -print0 \) | xargs -0 stat --format '%d %i ' -> Invoking pbuilder forking: pbuilder build --debbuildopts --debbuildopts --buildplace /var/cache/pbuilder/build//cow.29361 --buildresult /var/cache/pbuilder/result/ --debbuildopts --no-targz --internal-chrootexec chroot /var/cache/pbuilder/build//cow.29361 cow-shell /home/bas/tmp/debian/r-cran-gsl_1.9-10-1.1.dsc I: Running in no-targz mode I: using fakeroot in build. I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 22 21:58:53 CET 2015 I: pbuilder-time-stamp: 1448225933 I: copying local configuration I: mounting /proc filesystem I: mounting /run/shm filesystem I: mounting /dev/pts filesystem I: policy-rc.d already exists I: Obtaining the cached apt archive contents I: Installing the build-deps W: no hooks of type D found -- ignoring -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team <pbuilder-ma...@lists.alioth.debian.org> Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 9.0), cdbs, r-base-dev, libgsl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 12439 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 9.0); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on cdbs; however: Package cdbs is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: bsdmainutils{a} ca-certificates{a} cdbs{a} debhelper{a} dh-strip-nondeterminism{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-5{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas-common{a} libblas-dev{a} libblas3{a} libbz2-dev{a} libcairo2{a} libcroco3{a} libcurl3{a} libdatrie1{a} libexpat1{a} libffi6{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgfortran-5-dev{a} libgfortran3{a} libglib2.0-0{a} libgnutls-deb0-28{a} libgraphite2-3{a} libgsl-dev{a} libgsl2{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhogweed4{a} libice6{a} libicu55{a} libidn11{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} liblzma-dev{a} libmagic1{a} libncurses5-dev{a} libnettle6{a} libnghttp2-14{a} libp11-kit0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpcre16-3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpng12-0{a} libpng12-dev{a} libreadline-dev{a} libreadline6-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1{a} libssl1.0.2{a} libtasn1-6{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtinfo-dev{a} libtk8.6{a} libunistring0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxss1{a} libxt6{a} man-db{a} openssl{a} po-debconf{a} r-base-core{a} r-base-dev{a} ucf{a} unzip{a} x11-common{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: autotools-dev bzip2-doc curl krb5-locales libfile-mimeinfo-perl libglib2.0-data libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl lynx-cur r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs xml-core 0 packages upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/88.9 MB of archives. After unpacking 303 MB will be used. Writing extended state information... debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12439 files and directories currently installed.) Preparing to unpack .../groff-base_1.22.3-4_amd64.deb ... Unpacking groff-base (1.22.3-4) ... Selecting previously unselected package bsdmainutils. 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Selecting previously unselected package libgsl-dev. Preparing to unpack .../libgsl-dev_2.1+dfsg-1_amd64.deb ... Unpacking libgsl-dev (2.1+dfsg-1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../libharfbuzz0b_1.0.1-1+b1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (1.0.1-1+b1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../libjpeg62-turbo_1%3a1.4.1-2_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.4.1-2) ... Selecting previously unselected package libjpeg62-turbo-dev:amd64. Preparing to unpack .../libjpeg62-turbo-dev_1%3a1.4.1-2_amd64.deb ... Unpacking libjpeg62-turbo-dev:amd64 (1:1.4.1-2) ... Selecting previously unselected package libjpeg-dev. Preparing to unpack .../libjpeg-dev_1%3a1.4.1-2_all.deb ... Unpacking libjpeg-dev (1:1.4.1-2) ... Selecting previously unselected package liblapack3. Preparing to unpack .../liblapack3_3.5.0-5_amd64.deb ... Unpacking liblapack3 (3.5.0-5) ... Selecting previously unselected package liblapack-dev. Preparing to unpack .../liblapack-dev_3.5.0-5_amd64.deb ... Unpacking liblapack-dev (3.5.0-5) ... Selecting previously unselected package liblzma-dev:amd64. Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2.1_amd64.deb ... Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2.1) ... Selecting previously unselected package libtinfo-dev:amd64. Preparing to unpack .../libtinfo-dev_6.0+20151024-2_amd64.deb ... Unpacking libtinfo-dev:amd64 (6.0+20151024-2) ... Selecting previously unselected package libncurses5-dev:amd64. Preparing to unpack .../libncurses5-dev_6.0+20151024-2_amd64.deb ... Unpacking libncurses5-dev:amd64 (6.0+20151024-2) ... Selecting previously unselected package libthai-data. Preparing to unpack .../libthai-data_0.1.23-1_all.deb ... Unpacking libthai-data (0.1.23-1) ... Selecting previously unselected package libthai0:amd64. Preparing to unpack .../libthai0_0.1.23-1_amd64.deb ... Unpacking libthai0:amd64 (0.1.23-1) ... Selecting previously unselected package libpango-1.0-0:amd64. Preparing to unpack .../libpango-1.0-0_1.38.1-1_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.38.1-1) ... Selecting previously unselected package libpangoft2-1.0-0:amd64. Preparing to unpack .../libpangoft2-1.0-0_1.38.1-1_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.38.1-1) ... Selecting previously unselected package libpangocairo-1.0-0:amd64. Preparing to unpack .../libpangocairo-1.0-0_1.38.1-1_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.38.1-1) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../libpaper-utils_1.1.24+nmu4_amd64.deb ... Unpacking libpaper-utils (1.1.24+nmu4) ... Selecting previously unselected package libpcre16-3:amd64. Preparing to unpack .../libpcre16-3_2%3a8.35-7.4_amd64.deb ... Unpacking libpcre16-3:amd64 (2:8.35-7.4) ... Selecting previously unselected package libpcre32-3:amd64. 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Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../libtcl8.6_8.6.4+dfsg-2_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.4+dfsg-2) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../libtiff5_4.0.5-1_amd64.deb ... Unpacking libtiff5:amd64 (4.0.5-1) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../libtk8.6_8.6.4+dfsg-2_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.4+dfsg-2) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../libxt6_1%3a1.1.5-1_amd64.deb ... Unpacking libxt6:amd64 (1:1.1.5-1) ... Selecting previously unselected package zip. Preparing to unpack .../archives/zip_3.0-11_amd64.deb ... Unpacking zip (3.0-11) ... Selecting previously unselected package unzip. Preparing to unpack .../unzip_6.0-20_amd64.deb ... Unpacking unzip (6.0-20) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../xdg-utils_1.1.1-1_all.deb ... Unpacking xdg-utils (1.1.1-1) ... Selecting previously unselected package r-base-core. Preparing to unpack .../r-base-core_3.2.2-1_amd64.deb ... Unpacking r-base-core (3.2.2-1) ... Selecting previously unselected package r-base-dev. Preparing to unpack .../r-base-dev_3.2.2-1_all.deb ... Unpacking r-base-dev (3.2.2-1) ... Processing triggers for libc-bin (2.19-22) ... Setting up groff-base (1.22.3-4) ... Setting up bsdmainutils (9.0.6) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:amd64 (1.4.1-1) ... Setting up man-db (2.7.5-1) ... Building database of manual pages ... Setting up libexpat1:amd64 (2.1.0-7) ... Setting up libpng12-0:amd64 (1.2.54-1) ... Setting up libfreetype6:amd64 (2.6-2) ... Setting up ucf (3.0031) ... Setting up fonts-dejavu-core (2.35-1) ... Setting up fontconfig-config (2.11.0-6.3) ... Setting up libfontconfig1:amd64 (2.11.0-6.3) ... Setting up fontconfig (2.11.0-6.3) ... Regenerating fonts cache... done. Setting up libffi6:amd64 (3.2.1-3) ... Setting up x11-common (1:7.7+12) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults [....] Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix[?25l7[1G[[32m ok [39;49m8[?12l[?25h. Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up libpaper1:amd64 (1.1.24+nmu4) ... Creating config file /etc/papersize with new version Setting up libpcrecpp0v5:amd64 (2:8.35-7.4) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libssh2-1:amd64 (1.5.0-2+b1) ... Setting up libunistring0:amd64 (0.9.3-5.2+b1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-1) ... Setting up libxcb1:amd64 (1.11.1-1) ... Setting up libx11-data (2:1.6.3-1) ... Setting up libx11-6:amd64 (2:1.6.3-1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxrender1:amd64 (1:0.9.9-2) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libssl1.0.2:amd64 (1.0.2d-3) ... Setting up libmagic1:amd64 (1:5.25-2) ... Setting up file (1:5.25-2) ... Setting up gettext-base (0.19.6-1) ... Setting up libnettle6:amd64 (3.1.1-4) ... Setting up libhogweed4:amd64 (3.1.1-4) ... Setting up libp11-kit0:amd64 (0.23.1-3) ... Setting up libtasn1-6:amd64 (4.7-2) ... Setting up libgnutls-deb0-28:amd64 (3.3.18-1) ... Setting up libkeyutils1:amd64 (1.5.9-8) ... Setting up libkrb5support0:amd64 (1.13.2+dfsg-4) ... Setting up libk5crypto3:amd64 (1.13.2+dfsg-4) ... Setting up libkrb5-3:amd64 (1.13.2+dfsg-4) ... Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-4) ... Setting up libidn11:amd64 (1.32-3) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-14+b1) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-14+b1) ... Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2) ... Setting up libicu55:amd64 (55.1-6) ... Setting up libxml2:amd64 (2.9.2+zdfsg1-4) ... Setting up openssl (1.0.2d-3) ... Setting up ca-certificates (20150426) ... Setting up cdbs (0.4.130) ... Setting up libglib2.0-0:amd64 (2.46.2-1) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.9-1) ... Setting up gettext (0.19.6-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.18) ... Setting up libarchive-zip-perl (1.53-1) ... Setting up libfile-stripnondeterminism-perl (0.014-1) ... Setting up libgfortran3:amd64 (5.2.1-23) ... Setting up libgfortran-5-dev:amd64 (5.2.1-23) ... Setting up gfortran-5 (5.2.1-23) ... Setting up gfortran (4:5.2.1-4) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libblas-common (1.2.20110419-11) ... Setting up libblas3 (1.2.20110419-11) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libblas-dev (1.2.20110419-11) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libbz2-dev:amd64 (1.0.6-8) ... Setting up libpixman-1-0:amd64 (0.33.4-1) ... Setting up libxcb-render0:amd64 (1.11.1-1) ... Setting up libxcb-shm0:amd64 (1.11.1-1) ... Setting up libcairo2:amd64 (1.14.4-1) ... Setting up libnghttp2-14:amd64 (1.4.0-2) ... Setting up librtmp1:amd64 (2.4+20150115.gita107cef-1+b2) ... Setting up libcurl3:amd64 (7.45.0-1+b1) ... Setting up libdatrie1:amd64 (0.2.10-1) ... Setting up libgraphite2-3:amd64 (1.3.4-1) ... Setting up libgsl2:amd64 (2.1+dfsg-1) ... Setting up libgsl-dev (2.1+dfsg-1) ... Setting up libharfbuzz0b:amd64 (1.0.1-1+b1) ... Setting up libjpeg62-turbo:amd64 (1:1.4.1-2) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.4.1-2) ... Setting up libjpeg-dev (1:1.4.1-2) ... Setting up liblapack3 (3.5.0-5) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up liblapack-dev (3.5.0-5) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2.1) ... Setting up libtinfo-dev:amd64 (6.0+20151024-2) ... Setting up libncurses5-dev:amd64 (6.0+20151024-2) ... Setting up libthai-data (0.1.23-1) ... Setting up libthai0:amd64 (0.1.23-1) ... Setting up libpango-1.0-0:amd64 (1.38.1-1) ... Setting up libpangoft2-1.0-0:amd64 (1.38.1-1) ... Setting up libpangocairo-1.0-0:amd64 (1.38.1-1) ... Setting up libpaper-utils (1.1.24+nmu4) ... Setting up libpcre16-3:amd64 (2:8.35-7.4) ... Setting up libpcre32-3:amd64 (2:8.35-7.4) ... Setting up libpcre3-dev:amd64 (2:8.35-7.4) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Setting up libpng12-dev:amd64 (1.2.54-1) ... Setting up libreadline6-dev:amd64 (6.3-8+b3) ... Setting up libreadline-dev:amd64 (6.3-8+b3) ... Setting up libtcl8.6:amd64 (8.6.4+dfsg-2) ... Setting up libtiff5:amd64 (4.0.5-1) ... Setting up libtk8.6:amd64 (8.6.4+dfsg-2) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up zip (3.0-11) ... Setting up unzip (6.0-20) ... Setting up xdg-utils (1.1.1-1) ... Setting up r-base-core (3.2.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-base-dev (3.2.2-1) ... Setting up dh-strip-nondeterminism (0.014-1) ... Setting up debhelper (9.20151117) ... Processing triggers for libc-bin (2.19-22) ... Processing triggers for ca-certificates (20150426) ... Updating certificates in /etc/ssl/certs... 180 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libfakeroot The following NEW packages will be installed: fakeroot libfakeroot debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/129 kB of archives. After this operation, 434 kB of additional disk space will be used. Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17349 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.20.2-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.20.2-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.20.2-1_amd64.deb ... Unpacking fakeroot (1.20.2-1) ... Processing triggers for man-db (2.7.5-1) ... Setting up libfakeroot:amd64 (1.20.2-1) ... Setting up fakeroot (1.20.2-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode I: Copying back the cached apt archive contents I: Copying source file I: copying [/home/bas/tmp/debian/r-cran-gsl_1.9-10-1.1.dsc] I: copying [/home/bas/tmp/debian/r-cran-gsl_1.9-10.orig.tar.gz] I: copying [/home/bas/tmp/debian/r-cran-gsl_1.9-10-1.1.debian.tar.xz] I: Extracting source dpkg-source: warning: extracting unsigned source package (r-cran-gsl_1.9-10-1.1.dsc) dpkg-source: info: extracting r-cran-gsl in r-cran-gsl-1.9-10 dpkg-source: info: unpacking r-cran-gsl_1.9-10.orig.tar.gz dpkg-source: info: unpacking r-cran-gsl_1.9-10-1.1.debian.tar.xz I: Building the package W: no hooks of type A found -- ignoring I: Running cd tmp/buildd/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" dpkg-buildpackage -us -uc -rfakeroot dpkg-buildpackage: source package r-cran-gsl dpkg-buildpackage: source version 1.9-10-1.1 dpkg-buildpackage: source distribution UNRELEASED dpkg-buildpackage: source changed by Bas Couwenberg <sebas...@debian.org> dpkg-source --before-build r-cran-gsl-1.9-10 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean test -x debian/rules dh_clean if test -d src; then \ find src -regex ".*\.o" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status dpkg-source -b r-cran-gsl-1.9-10 dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building r-cran-gsl using existing ./r-cran-gsl_1.9-10.orig.tar.gz dpkg-source: info: building r-cran-gsl in r-cran-gsl_1.9-10-1.1.debian.tar.xz dpkg-source: info: building r-cran-gsl in r-cran-gsl_1.9-10-1.1.dsc debian/rules build test -x debian/rules mkdir -p "." fakeroot debian/rules binary test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." dh_installdirs usr/lib/R/site-library echo "R:Depends=r-base-core (>= 3.2.2-1), r-api-3" >> debian/r-cran-gsl.substvars if test -f /usr/bin/xvfb-run; then \ xvfb-run -a \ R CMD INSTALL -l /tmp/buildd/r-cran-gsl-1.9-10/debian/r-cran-gsl/usr/lib/R/site-library --clean \ . \ "--built-timestamp=\"Sun, 22 Nov 2015 21:58:32 +0100\"" \ ; \ else \ R CMD INSTALL -l /tmp/buildd/r-cran-gsl-1.9-10/debian/r-cran-gsl/usr/lib/R/site-library \ --clean . \ "--built-timestamp=\"Sun, 22 Nov 2015 21:58:32 +0100\"" \ ; \ fi * installing *source* package 'gsl' ... ** package 'gsl' successfully unpacked and MD5 sums checked checking for gsl-config... /usr/bin/gsl-config checking if GSL version >= 1.12... checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed configure: error: Need GSL version >= 1.12 ERROR: configuration failed for package 'gsl' * removing '/tmp/buildd/r-cran-gsl-1.9-10/debian/r-cran-gsl/usr/lib/R/site-library/gsl' /usr/share/R/debian/r-cran.mk:98: recipe for target 'R_any_arch' failed make: *** [R_any_arch] Error 1 dpkg-buildpackage: error: fakeroot debian/rules binary gave error exit status 2 E: Failed autobuilding of package W: no hooks of type C found -- ignoring I: unmounting dev/pts filesystem I: unmounting run/shm filesystem I: unmounting proc filesystem -> Cleaning COW directory forking: rm -rf /var/cache/pbuilder/build//cow.29361diff -Nru r-cran-gsl-1.9-10/debian/changelog r-cran-gsl-1.9-10/debian/changelog --- r-cran-gsl-1.9-10/debian/changelog 2014-06-23 12:25:00.000000000 +0200 +++ r-cran-gsl-1.9-10/debian/changelog 2015-11-22 21:58:37.000000000 +0100 @@ -1,3 +1,10 @@ +r-cran-gsl (1.9-10-1.1) UNRELEASED; urgency=medium + + * Non-maintainer upload. + * Update build dependencies for GSL 2, change libgsl0-dev to libgsl-dev. + + -- Bas Couwenberg <sebas...@debian.org> Sun, 22 Nov 2015 21:58:32 +0100 + r-cran-gsl (1.9-10-1) unstable; urgency=low * Initial release (Closes: #752387). diff -Nru r-cran-gsl-1.9-10/debian/control r-cran-gsl-1.9-10/debian/control --- r-cran-gsl-1.9-10/debian/control 2014-06-23 10:58:32.000000000 +0200 +++ r-cran-gsl-1.9-10/debian/control 2015-11-22 21:58:30.000000000 +0100 @@ -6,7 +6,7 @@ Build-Depends: debhelper (>= 9.0), cdbs, r-base-dev, - libgsl0-dev + libgsl-dev Standards-Version: 3.9.5 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-science/packages/R/trunk/packages/r-cran-gsl/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-science/packages/R/trunk/packages/r-cran-gsl/trunk/
--- End Message ---
--- Begin Message ---Source: r-cran-gsl Source-Version: 1.9-10.1-1 We believe that the bug you reported is fixed in the latest version of r-cran-gsl, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 805...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated r-cran-gsl package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 04 Dec 2015 09:16:11 +0100 Source: r-cran-gsl Binary: r-cran-gsl Architecture: source amd64 Version: 1.9-10.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Team <debian-science-maintainers@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: r-cran-gsl - GNU R wrapper for the GNU Scientific Library Closes: 805829 Changes: r-cran-gsl (1.9-10.1-1) unstable; urgency=medium . [ Bas Couwenberg ] * Update build dependencies for GSL 2, change libgsl0-dev to libgsl-dev . [ Andreas Tille ] * New upstream version Closes: #805829 * cme fix dpkg-control Checksums-Sha1: ce1f3fe678deb090cc242f84f0da3765d7c97eef 2054 r-cran-gsl_1.9-10.1-1.dsc 8a2e1010fcdf7d0318c1dec01765f6be006cd841 342933 r-cran-gsl_1.9-10.1.orig.tar.gz 47187e3a0fc4d38ceaeea389cb19d9e33486bc39 1780 r-cran-gsl_1.9-10.1-1.debian.tar.xz 6b7b741a0197cea6efe48eb615b5a0a5ba272963 480872 r-cran-gsl_1.9-10.1-1_amd64.deb Checksums-Sha256: 1e9daeb601c527ce64d969b2947d8beccc6546756a300f71a94facc686d4e627 2054 r-cran-gsl_1.9-10.1-1.dsc 777ff7d8fbcaf412e5d0b5ff89ebb3ae988d8e467221302c5653abf98bfd7d5d 342933 r-cran-gsl_1.9-10.1.orig.tar.gz 111602f45e69e25294a3754dbeac5da9c7dbd26a1adf689c01aa3cd1576d145b 1780 r-cran-gsl_1.9-10.1-1.debian.tar.xz a8af8a7ad3648182f14f3e0fc401baa9e33b2c4184eddddaa1d118e246d2cd1f 480872 r-cran-gsl_1.9-10.1-1_amd64.deb Files: b1b39fee58a8f6cc8deee2c87964eba9 2054 gnu-r optional r-cran-gsl_1.9-10.1-1.dsc f839752d83ece546c0e8f6a1d7c945db 342933 gnu-r optional r-cran-gsl_1.9-10.1.orig.tar.gz 0ddafe443fd1c25beb0676f991b662a9 1780 gnu-r optional r-cran-gsl_1.9-10.1-1.debian.tar.xz b7a8158607adc24adf5992e71e799309 480872 gnu-r optional r-cran-gsl_1.9-10.1-1_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJWYU2ZAAoJEFeKBJTRxkbR/pEP/3RNj13IudiFYYryp5159Yus yZ81B4qiNDXaC2o7sinvU1kgXjudC6/RaAdee54BkYlr2B71pamq1ziEC0CFWMT2 tsiW+RffFRVlrRcAK8OjcLx4NMXvjod6M0F5mf5r4TZX7Hd/YkRL9REPtwkGcXg+ tWKnprEN8Yj+puBBSD0+Hu76tU53/xkq9nOMdQ4txBx8JHsiixrAQANgr0r8I2xg mHJOF6vg4GD1NaXpWtAki1stQydy0QDzZquwF/XR0dmWtTldnxg9mfq5al89tx5P 9ww/cT8L9lTtl36DnalHBQoqbmEMCq/Mnn/vZQm2CQuS/pk6Ncxz951KSK6w45a8 sk7GaoDH/Ch/uShgclPfnv1fFPRnPCoroEaEVJYyN/2GsJM0FxaHAnUQhstYqqm1 I3l9JykArCOpAvhZ3GbpvRiQ0iWvcPtmrKrVzUOdk/D2wxuy+7tggawzSoAsitPm 7VvwqRwTsfiP8EiuO1SagfjHioWgqAreut47EHX55PFqg+LUs3s8ntbK08Pqsfgm WaBQ1g1wEjgtmRmE5dlLU5T6HnRdyaJ+KAyposXHdbW3sA1qyeqV5D7S85+F1EoB X8QQJYPXAm8RbvsvrNbPh4DA5IgLella+cFsjbvvMNy+pKvULZ3feaGGqPktesGf EJsErwPh6bvyBurU+WbX =hACF -----END PGP SIGNATURE-----
--- End Message ---
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