Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : deepboof
Version : 0.4+ds
Upstream Author : Peter Abeles
* URL : https://github.com/lessthanoptimal/DeepBoof
* License : Apache-2.0
Programming Lang: Java
Description : Java library
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
control: block 635182 by -1
* Package name : libsignatures-java
Version : 0.0~git20141229.14f3045+ds
Upstream Author : Lars Carlsson and Gilleain Torrance
* URL : https://github.com/gilleain/signatures
* License
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
control: block 635182 by -1
* Package name : libbeam-java
Version : 1.3.3
Upstream Author : European Bioinformatics Institute (EMBL-EBI)
* URL : http://www.github.com/johnmay/beam/
* License : BSD-2-clause
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
control: block 945132 by -1
* Package name : libeuclid-java
Version : 1.0.1
Upstream Author : Peter Murray-Rust
* URL : http://bitbucket.org/wwmm/euclid
* License : Apache-2.0
Programming Lang: Java
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
control: block 635182 by -1
* Package name : cmlxom
Version : 3.1
Upstream Author : Peter Murray-Rust
* URL : https://bitbucket.org/wwmm/cmlxom
* License : Apache-2.0
Programming Lang: Java
Description
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : georegression
Version : 0.20+ds
Upstream Author : Peter Abeles
* URL : https://georegression.org
* License : Apache-2.0
Programming Lang: Java
Description : Geometric Regression
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : ddogleg
Version : 0.17+ds
Upstream Author : Peter Abeles
* URL : http://ddogleg.org
* License : Apache-2.0
Programming Lang: Java
Description : library for non-linear optimization
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : commons-text
Version : 1.8
Upstream Author : The Apache Software Foundation
* URL : https://github.com/apache/commons-text
* License : Apache-2.0
Programming Lang: Java
Description
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : jsonld-java
Version : 0.12.5
Upstream Author : Deutsche Forschungszentrum für Künstliche Intelligenz GmbH
* URL : http://github.com/jsonld-java/jsonld-java/
* License : BSD-3-clause
retitle -1 RFP: coot-reference-structures -- high resolution PDB files used as
reference structures by coot
noowner -1
tags -1 + wontfix
unblock 897673 by -1
thanks
The license of the Protein DataBank entries explicitly forbids redistribution
of modified data using the same file names [1], what
Control: tag -1 + moreinfo
Hello,
The URL from the original bug report [1] is HTTP 404 now. An update is
needed to properly identify what is meant by this bug report.
Andrius
[1] https://github.com/msporny/libjsonld
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : node-chai-as-promised
Version : 7.1.1
Upstream Author : Domenic Denicola
* URL : https://github.com/domenic/chai-as-promised
* License : WTFPL
Programming Lang: JavaScript
Description
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : node-pg-hstore
Version : 2.3.3
Upstream Author : Seth Carney
* URL : https://github.com/scarney81/pg-hstore
* License : Expat
Programming Lang: JavaScript
Description : Module
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : node-dottie
Version : 2.0.1
Upstream Author : Mick Hansen
* URL : https://github.com/mickhansen/dottie.js
* License : Expat
Programming Lang: JavaScript
Description : Fast and safe
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
Control: block 585905 by -1
* Package name : stream-lib
Version : 2.9.8
Upstream Author : Matt Abrams
* URL : https://github.com/addthis/stream-lib
* License : Apache-2.0
Programming Lang: Java
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : mmtf-java
Version : 1.0.9
Upstream Author : RCSB PDB
* URL : https://github.com/rcsb
* License : Apache-2.0
Programming Lang: (C, C++, C#, Perl, Python, etc.)
Description : Java API
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : msgpack-java
Version : 0.8.17
Upstream Author : Sadayuki Furuhashi et al.
* URL : http://msgpack.org/
* License : Apache-2.0
Programming Lang: Java
Description : MessagePack
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : jni-inchi
Version : 0.8
Upstream Author : Sam Adams
* URL : http://jniinchi.sourceforge.net
* License : GPL-3
Programming Lang: (C, C++, C#, Perl, Python, etc.)
Description : Java
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : jnati
Version : 0.4
Upstream Author : Sam Adams
* URL : http://jnati.sourceforge.net/
* License : GPL-3
Programming Lang: Java
Description : Java Native Execution Framework
On 2019-08-27 12:58, Pirate Praveen wrote:
> As per https://wiki.debian.org/Javascript/Nodejs/NEW this package was
> rejected for being simple in favor of embedding. You can just embed the
> component using add-node-component -if grunt-banner.
Thanks for the suggestion!
Best,
Andrius
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : node-inflection
Version : 1.12.0
Upstream Author : , dreamerslab
* URL : https://github.com/dreamerslab/node.inflection
* License : MIT
Programming Lang: (C, C++, C#, Perl, Python, etc
On 2019-08-21 15:51, Xavier wrote:
> I just pushed it to NEW queue with its dependencies.
Great, thanks a lot!
Andrius
Hi,
On 2019-08-21 11:55, Xavier wrote:
> no real reason, node-bunyan is needed for node-ldapjs which is not
> ready. It requires also node-dtrace-provider and node-vasync. Do you
> need it for another reason ?
Yes, I am investigating packaging possibilities of overleaf
dependencies. One of them,
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : gral
Version : 0.11
Upstream Author : Erich Seifert and Michael Seifert
* URL : https://github.com/eseifert/gral
* License : LGPL-3+
Programming Lang: Java
Description : Java
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : jep
Version : 2.4.1+ds
Upstream Author : Nathan Funk and Richard Morris
* URL : http://www.singularsys.com/jep/
* License : GPL-2
Programming Lang: Java
Description : Java
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : openchemlib
Version : 2019.7.0
Upstream Author : Idorsia Pharmaceuticals Ltd
* URL : https://github.com/Actelion/openchemlib
* License : BSD-3-clause
Programming Lang: Java
Description
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : pycifrw
Version : 4.4
Upstream Author : Copyright: James Hester
* URL : https://bitbucket.org/jamesrhester/pycifrw
* License : Python-2.0
Programming Lang: Python
Description : CIF
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : vectorgraphics2d
Version : 0.13
Upstream Author : Erich Seifert
* URL : https://github.com/eseifert/vectorgraphics2d
* License : LGPL-3+
Programming Lang: Java
Description
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : zip4j
Version : 1.3.3+ds
Upstream Author : , Srikanth Reddy Lingala
* URL : http://www.lingala.net/zip4j
* License : Apache-2.0
Programming Lang: Java
Description : java library
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : jarchivelib
Version : 1.0.0
Upstream Author : Thomas Rausch
* URL : https://rauschig.org/jarchivelib/
* License : Apache-2.0
Programming Lang: Java
Description : simple archiving
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : auto64fto32f
Version : 1.4
Upstream Author : Peter Abeles
* URL : https://github.com/lessthanoptimal/Auto64Fto32F
* License : Unlicense
Programming Lang: Java
Description
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : gversion-plugin
Version : 1.5.0
Upstream Author : Peter Abeles
* URL : https://github.com/lessthanoptimal/gversion-plugin
* License : MIT or Unlicense
Programming Lang: Java
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
Control: block -1 by 928694
* Package name : libponapi-client-perl
Version : 0.002011
Upstream Author : Copyright: Mickey Nasriachi et al.
* URL : https://metacpan.org/release/PONAPI-Client
* License
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : libyahc-perl
Version : 0.035
Upstream Author : Ivan Kruglov
* URL : https://metacpan.org/release/YAHC
* License : MIT
Programming Lang: Perl
Description : Yet another HTTP client
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
X-Debbugs-CC: pkg-games-de...@lists.alioth.debian.org
* Package name : pmars
Version : 0.9.2
Upstream Author : Albert Ma
* URL : http://www.koth.org/pmars
* License : GPL-2
Programming Lang: C
control: unblock -1 by 793644
Hello,
Apache Cassandra can be built and run without the need of Hadoop.
Hadoop-dependent Cassandra classes can be removed without affecting the
build process. Thus these classes possibly serve just as plug-in interface.
Best,
Andrius
--
Andrius Merkys
Vilnius
idea how difficult the migration is.
Best,
Andrius
--
Andrius Merkys
Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325
LT-10257 Vilnius, Lithuania
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
Control: block 585905 by -1
* Package name : compile-command-annotations
Version : 1.2.1
Upstream Author : Julien Nicoulaud
* URL : http://compile-command-annotations.nicoulaj.net
* License : Apache-2.0
--
Andrius Merkys
Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325
LT-10257 Vilnius, Lithuania
Package: wnpp
Severity: wishlist
Owner: Andrius Merkys
X-Debbugs-CC: debian-de...@lists.debian.org, debian...@lists.debian.org
* Package name : golang-github-minio-blake2b-simd
Version : 0.0~git20160723.3f5f724-1
Upstream Author : Object Storage for AI
* URL : https
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
Control: submitter -1 mer...@debian.org
Control: block 585905 by -1
* Package name : jamm
Version : 0.3.3
Upstream Author : Stephen Connolly
* URL : https://github.com/jbellis/jamm/
* License : Apache-2.0
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
Control: block 585905 by -1
* Package name : byteman
Version : 4.0.5
Upstream Author : , Red Hat and individual contributors
* URL : http://byteman.jboss.org
* License : LGPL-2.1+
Programming Lang: Java
Control: block -1 by 793644
Hello,
I am looking into packaging of Apache Cassandra now. It seems to depend
on Apache Hadoop as of v3.11.4:
[javac]
/home/andrius/debian-packages/cassandra/src/java/org/apache/cassandra/client/RingCache.java:32:
error: package org.apache.hadoop.conf does not
Package: wnpp
Owner: Andrius Merkys
Severity: wishlist
* Package name : openmm
Version : 7.3.0
Upstream Author : Stanford University and the Authors
* URL : http://openmm.org
* License : MIT
Programming Lang: C
Description : high performance toolkit
Package: wnpp
Severity: wishlist
* Package name : libcassandra-client-perl
Version : 0.16
Upstream Author : Tom van der Woerdt
* URL : https://metacpan.org/module/Cassandra::Client
* License : Artistic or GPL-1+
Programming Lang: Perl
Description :
On 2019-03-01 15:57, gregor herrmann wrote:
> I've uploaded the package to NEW now; let's see how it behaves :)
Great, thanks a lot! :)
Andrius
--
Andrius Merkys
Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325
LT-10257 Vilnius, Lithuania
signature.asc
Descript
but
fully enough to cover the minor differences between the APIs of csnappy
and snappy-c (AFAIK). If it gives more confidence, the built package
successfully pass integration tests with Cache::FastMmap, although it's
not much more than a roundtrip with long random strings.
Best,
Andrius
--
Andri
/modules/packages/libcompress-snappy-perl
--
Andrius Merkys
Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325
LT-10257 Vilnius, Lithuania
signature.asc
Description: OpenPGP digital signature
a local copy on their harddisk or in their
> backups? But probably just running dh-make-perl is faster :)
I did 'cpan2deb', applied your patch [1] and built the package
successfully. Yay!
Thanks,
Andrius
[1]
https://bugs.debian.org/cgi-bin/bugreport.cgi?att=1;bug=722345;filename=libsnappy.diff;msg=15
--
packaging of Compress::Snappy. However,
the packaging repository [1] does not seem to be migrated to salsa.d.o.
Is there a way to access it now?
Best wishes,
Andrius
[1]
http://anonscm.debian.org/gitweb/?p=pkg-perl/packages/libcompress-snappy-perl.git
--
Andrius Merkys
Vilnius University
Hello,
I have finished packaging mysql-workbench v8.0.13. Please review my MR on salsa
[1].
Best wishes,
Andrius
[1] https://salsa.debian.org/debian/mysql-workbench/merge_requests/1
--
Andrius Merkys
Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325
LT-10257 Vilnius
R4' errors). Could you please sponsor the upload for me? [RFS][ITP][SALSA]
> ANTLR4 might need update to version 4.7.1 as well.
Done.
Best wishes,
Andrius
[RFS] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=919257
[ITP] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=918109
[SALSA] https
Package: wnpp
Severity: wishlist
Owner: Andrius Merkys
Control: block 914434 by -1
* Package name: antlr4-cpp-runtime
Version : 4.7.2
Upstream Author : Terence Parr
* URL : http://www.antlr4.org
* License : BSD-3-clause
Programming Lang: Java
Description
Package: wnpp
Severity: wishlist
Owner: Andrius Merkys
Control: block -1 by 911286
* Package name: string-template-maven-plugin
Version : 1.1
Upstream Author : Kevin Birch
* URL : https://kevinbirch.github.io/string-template-maven-plugin
* License : MIT
Package: wnpp
Severity: wishlist
Owner: Andrius Merkys
* Package name: mojo-executor
Version : 2.3.0
Upstream Author : Don Brown
* URL : https://timmoore.github.com/mojo-executor/
* License : Apache-2.0 or GPL-2
Programming Lang: Java
Description
Package: wnpp
Severity: wishlist
Owner: Andrius Merkys
* Package name: pilercr
Version : 1.06
Upstream Author : Edgar R. C.
* URL : http://www.drive5.com/pilercr/
* License : public-domain
Programming Lang: C++
Description : software for finding CRISPR
Package: wnpp
Severity: wishlist
Owner: Andrius Merkys
* Package name: apache-opennlp
Version : 1.9.0
Upstream Author : The Apache Software Foundation
* URL : https://opennlp.apache.org
* License : Apache-2.0
Programming Lang: Java
Description
Package: wnpp
Severity: wishlist
Owner: Andrius Merkys
Control: block 897673 by -1
* Package name: coot-reference-structures
Version : 20130312
Upstream Author : Paul Emsley
* URL :
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/reference
=8672732540737765863=
--
Andrius Merkys
Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325
LT-10257 Vilnius, Lithuania
to maintain the package inside the Debichem team.
--
Andrius Merkys
Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325
LT-10257 Vilnius, Lithuania
ditional or related info.
> It provides commands for manipulating the passwords, allowing the user
> to add, remove, edit, generate passwords etc.
>
> Repository: https://gitlab.com/dashohoxha/pw
> Documentation: https://dashohoxha.gitlab.io/pw/man/
>
--
Andrius Merkys
Vil
Package: wnpp
Severity: wishlist
Owner: Andrius Merkys
* Package name: reentry
Version : 1.2.1a2
Upstream Author : Rico Haeuselmann
* URL : https://pypi.org/project/reentry/
* License : MIT
Programming Lang: Python
Description : plugin manager based
retitle 814867 ITP: inchi -- International Chemical Identifier generator
owner 814867 !
thanks
Hello,
I am interested in packaging inchi. Everyone willing to contribute is welcome.
The package is to be maintained by DebiChem.
Best,
Andrius
--
Andrius Merkys
Vilnius University Institute
ry.
Best wishes,
Andrius
--
Andrius Merkys
Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325
LT-10257 Vilnius, Lithuania
Debian altogether.
Best,
Andrius
--
Andrius Merkys
Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325
LT-10257 Vilnius, Lithuania
Package: wnpp
Severity: wishlist
Owner: Andrius Merkys <andrius.mer...@gmail.com>
Control: block 897579 by -1
* Package name: refmac-dictionary
Version : 5.41
Upstream Author : Garib Murshudov <ga...@mrc-lmb.cam.ac.uk>
* URL :
http://www2.mrc-lmb.cam.
Package: wnpp
Severity: wishlist
Owner: Andrius Merkys <andrius.mer...@gmail.com>
Control: block -1 by 897579
* Package name: coot
Version : 0.8.9.1
Upstream Author : Paul Emsley <paul.ems...@bioch.ox.ac.uk>
* URL : http://www2.mrc-lmb.cam.ac.uk/Personal/
Dear Gregor,
On 12/21/2017 03:29 PM, gregor herrmann wrote:
> I've uploaded the package to the NEW queue.
many thanks for reviewing and uploading the package!
Best wishes,
Andrius
--
Andrius Merkys
PhD student at Vilnius University Institute of Biotechnology, Saulėtekio al. 7,
room V325
/2017 08:20 PM, gregor herrmann wrote:
> On Wed, 20 Dec 2017 19:44:08 +0200, Andrius Merkys wrote:
>
>> I consider the package libspreadsheet-readsxc-perl ready to be uploaded
>> to Debian. I have prepared it in
>> https://anonscm.debian.org/git/pkg-perl/packages/libspre
Dear Gregor,
thank you for reviewing my package! I will check the TODO list and fix
the package accordingly.
Many thanks,
Andrius
On 12/20/2017 08:20 PM, gregor herrmann wrote:
> On Wed, 20 Dec 2017 19:44:08 +0200, Andrius Merkys wrote:
>
>> I consider the package libspreadsheet-
--
Andrius Merkys
PhD student at Vilnius University Institute of Biotechnology, Saulėtekio al. 7,
room V325
LT-10257 Vilnius, Lithuania
Package: wnpp
Severity: wishlist
Owner: Andrius Merkys <andrius.mer...@gmail.com>
* Package name: libspreadsheet-readsxc-perl
Version : 0.20
Upstream Author : Christoph Terhechte <terhec...@cpan.org>
* URL : https://metacpan.org/release/Spreadsheet-ReadS
there? If not, would you mind
if I start packaging spglib there (either on top or as a separate branch)?
Best wishes,
Andrius Merkys
--
Andrius Merkys
PhD student at Vilnius University Institute of Biotechnology, Saulėtekio al. 7,
room V325
LT-10257 Vilnius, Lithuania
Package: wnpp
Severity: wishlist
Owner: Andrius Merkys <andrius.mer...@gmail.com>
* Package name: spglib
Version : 1.10.1
Upstream Author : Atsushi Togo <atz.t...@gmail.com>
* URL : https://atztogo.github.io/spglib/
* License : BSD-3-Clause
Prog
Package: wnpp
Severity: wishlist
Owner: Andrius Merkys <andrius.mer...@gmail.com>
* Package name: voronota
Version : 1.18.1877
Upstream Author : Kliment Olechnovič <klim...@ibt.lt>
* URL : https://bitbucket.org/kliment/voronota
* License : MIT
pe of Debian Science or DebiChem. I'd like to suggest you should
> maintain the package in either of this team.
>
> Kind regards
>
>Andreas.
>
> On Wed, Jun 07, 2017 at 04:33:49PM +0300, Andrius Merkys wrote:
>> Package: wnpp
>> Severity: wishlist
>&
ld I apply for their help for packaging
cod-tools?
Many thanks,
Andrius
On 07/06/17 17:19, Steffen Möller wrote:
> Hi Andrius,
>
> I happily help with sponsoring. You may also consider to team up with
> Debian Science at some point.
>
> Best,
>
> Steffen
--
Andrius Merkys
o team up with
> Debian Science at some point.
>
> Best,
>
> Steffen
--
Andrius Merkys
PhD student at Vilnius University Institute of Biotechnology, Saulėtekio al. 7,
room V325
LT-10257 Vilnius, Lithuania
Lecturer at Vilnius University Faculty of Mathematics and Informatics,
Naugarduk
Package: wnpp
Severity: wishlist
Owner: Andrius Merkys <andrius.mer...@gmail.com>
* Package name: cod-tools
Version : 2.0
Upstream Author : Saulius Gražulis <grazu...@ibt.lt>, Andrius Merkys
<andrius.mer...@gmail.com>, Antanas Vaitkus <antanas.vaitk
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