Your message dated Sat, 09 Jul 2022 18:00:17 +0000
with message-id <e1oaekb-0006d9...@fasolo.debian.org>
and subject line Bug#1014513: fixed in pdb-tools 2.5.0-1
has caused the Debian Bug report #1014513,
regarding ITP: pdb-tools -- tools for manipulating and editing PDB files
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1014513: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1014513
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Owner: Andrius Merkys <mer...@debian.org>
Severity: wishlist
Control: block 1014457 by -1
* Package name : pdb-tools
Version : 2.5.0
Upstream Author : João Pedro Rodrigues
* URL : https://www.bonvinlab.org/pdb-tools/
* License : Apache-2.0
Programming Lang: Python
Description : tools for manipulating and editing PDB files
Manipulating PDB files is often painful. Extracting a particular chain
or set of
residues, renumbering residues, splitting or merging models and chains,
or just
ensuring the file is conforming to the PDB specifications are examples
of tasks
that can be done using any decent parsing library or graphical
interface. These,
however, almost always require 1) scripting knowledge, 2) time, and 3)
installing
one or more programs.
pdb-tools were designed to be a swiss-knife for the PDB format. They have no
external dependencies, besides obviously the Python programming language.
They are the descendant of a set of old FORTRAN77 programs that had the
particular advantage of working with streams, i.e. the output of one script
could be piped into another. Since FORTRAN77 is a pain too, I rewrote
them in
Python and added a few more utilities.
The philosophy of the scripts is simple: one script, one task. If you
want to
do two things, pipe the scripts together. Requests for new scripts will
be taken
into consideration - use the Issues button or write them yourself and
create a
Pull Request.
pdb-tools is a dependency of haddock3 (ITP #1014457), but it is also a
useful package on its own.
Remark: This package is to be maintained with Debichem Team at
https://salsa.debian.org/debichem-team/pdb-tools
--- End Message ---
--- Begin Message ---
Source: pdb-tools
Source-Version: 2.5.0-1
Done: Andrius Merkys <mer...@debian.org>
We believe that the bug you reported is fixed in the latest version of
pdb-tools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1014...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andrius Merkys <mer...@debian.org> (supplier of updated pdb-tools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 07 Jul 2022 08:49:36 -0400
Source: pdb-tools
Binary: pdb-tools python3-pdbtools
Architecture: source all
Version: 2.5.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Andrius Merkys <mer...@debian.org>
Description:
pdb-tools - tools for manipulating and editing PDB files
python3-pdbtools - tools for manipulating and editing PDB files (Python 3
package)
Closes: 1014513
Changes:
pdb-tools (2.5.0-1) unstable; urgency=medium
.
* Initial release. (Closes: #1014513)
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