On Tue, Jul 8, 2008 at 1:51 PM, Charles Plessy [EMAIL PROTECTED] wrote:
This short description is actually the expansion of the `Maq' acronym. I
usually like to expand acronyms in the short description, but if it is
not appropriate, I will change it.
Ah. My post was because I was concerned it
Le Tue, Jul 08, 2008 at 02:33:41PM +0800, Paul Wise a écrit :
The problem boils down to the short description not having any words
that are specific to the field the package relates to.
I am actually quite happy that the jargon of genomics is still using
common dictionnary words. The downside
On Tue, 08 Jul 2008, Charles Plessy wrote:
The more we signal to non-biologists that the package is not for them,
the less we can tell biologists what it does. Couldn't we rely on
Debtags to indicate the field of the package to our users?
No. Debtags is meant for searching, it's not meant to
On Tue, 8 Jul 2008, Charles Plessy wrote:
For Lenny, we just removed the `[Biology]' tag that was heading the
short descriptions of the packages maintained by the Debian-Med
packaging team, and my gut feeling was that forcing additions of
biological in a field where space is limited was letting
On Tue, 08 Jul 2008, Charles Plessy wrote:
How about builds assembly by mapping short reads to reference
sequences? (cut from Upsteam's website) The mapping is definitely
not genetic, and if the authors avoided genomic, there is probably
a good reason for.
Consider:
assembles short
ti, 2008-07-08 kello 14:51 +0900, Charles Plessy kirjoitti:
How about builds assembly by mapping short reads to reference
sequences?
Speaking as an outsider to both biology and interior decoration, as far
as I can determine that short description could apply equally well to
genetics and IKEA
Le Tue, Jul 08, 2008 at 12:55:01AM -0700, Don Armstrong a écrit :
On Tue, 08 Jul 2008, Charles Plessy wrote:
How about builds assembly by mapping short reads to reference
sequences? (cut from Upsteam's website) The mapping is definitely
not genetic, and if the authors avoided genomic, there
Charles Plessy dijo [Tue, Jul 08, 2008 at 07:00:17PM +0900]:
Consider:
assembles short fixed-legth DNA sequences by mapping to reference
sequences
Hi Don,
After quickly browsing the Maq's user manual, I get the feeling that its
main feature is not assembly (in particular, it can
On Tue, 08 Jul 2008, Charles Plessy wrote:
After quickly browsing the Maq's user manual, I get the feeling that
its main feature is not assembly (in particular, it can not compute
de novo assemblies).
Yes, but can it complete a dense enough map so that it's an assembly?
[De novo assembly is
Charles Plessy dijo [Tue, Jul 08, 2008 at 07:00:17PM +0900]:
How about maps short polymorphic reads to reference biological sequences.
Le Tue, Jul 08, 2008 at 08:40:28AM -0500, Gunnar Wolf a écrit :
I think this line is quite nice as a short description - And as the
first line of the long
Package: wnpp
Severity: wishlist
Owner: Charles Plessy [EMAIL PROTECTED]
Package name: maq
Version : 0.6.7
Upstream Author : Heng Li [EMAIL PROTECTED]
URL : http://maq.sourceforge.net/
License : GPL-3
Programming Lang: C
Description : Mapping and
On Tue, Jul 8, 2008 at 12:15 PM, Charles Plessy [EMAIL PROTECTED] wrote:
Description : Mapping and Assembly with Quality
Please add genetic to the short description and no need to
capitalise the words. Also, is with Quality needed, perhaps it needs
to be with probabilistic quality?
--
Le Tue, Jul 08, 2008 at 01:03:26PM +0800, Paul Wise a écrit :
On Tue, Jul 8, 2008 at 12:15 PM, Charles Plessy [EMAIL PROTECTED] wrote:
Description : Mapping and Assembly with Quality
Please add genetic to the short description and no need to
capitalise the words. Also, is with
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