The packaging should care of these:

http://wiki.apache.org/hadoop/Hbase/FAQ#A6

Why do I see "java.io.IOException...(Too many open files)" in my logs?

Currently Hbase is a file handle glutton. Running an Hbase loaded w/ more than 
a few regions, its possible to blow past the common 1024 default file handle 
limit for the user running the process. Running out of file handles is like an 
OOME, things start to fail in strange ways. To up the users' file handles, 
edit /etc/security/limits.conf on all nodes and restart your cluster.

{{{# Each line describes a limit for a user in the form: # # domain type item 
value # hbase - nofile 32768}}}

You may need to also edit sysctl.conf.

The math runs roughly as follows: Per column family, there is at least one 
mapfile and possibly up to 5 or 6 if a region is under load (lets say 3 per 
column family on average). Multiply by the number of regions per region 
server. So, for example, say you have a schema of 3 column familes per region 
and that you have 100 regions per regionserver, the JVM will open 3 * 3 * 100 
mapfiles -- 900 file descriptors not counting open jar files, conf files, etc 
(Run 'lsof -p REGIONSERVER_PID' to see for sure). 

-------------------------

http://pero.blogs.aprilmayjune.org/2009/01/22/hadoop-and-linux-kernel-2627-
epoll-limits/

A day and several installation routines later we figured out that the 
available epoll resources were not sufficient any more. Java JDK 1.6 uses 
epoll to implement non-blocking-IO. With kernel 2.6.27 resource limits have 
been introduced and the default on openSuSE is 128 - way too low.

Increasing the limit with echo 1024 > /proc/sys/fs/epoll/max_user_instances 
fixed the cluster immediately. To make this setting boot safe add the 
following line to /etc/sysctl.conf:

fs.epoll.max_user_instances = 1024

Thomas Koch, http://www.koch.ro



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