Package: wnpp Severity: wishlist Owner: Debian Med team <debian-...@lists.debian.org>
* Package name : r-bioc-dnacopy Version : 1.46.0 Upstream Author : Venkatraman E. Seshan <sesh...@mskcc.org> * URL : http://www.bioconductor.org/packages/release/bioc/html/DNAcopy.html * License : GPL-2.0+ Programming Lang: R Description : R package: DNA copy number data analysis Implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number. . This package is for analyzing array DNA copy number data, which is usually (but not always) called array Comparative Genomic Hybridization (array CGH) data It implements a methodology for finding change-points in these data which are points after which the (log) test over reference ratios have changed location. This model is that the change-points correspond to positions where the underlying DNA copy number has changed. Therefore, change-points can be used to identify regions of gained and lost copy number. We also provide a function for making relevant plots of these data. This is a dependency for r-cran-pscbs and will be team maintained by the Debian Med team
