Your message dated Sun, 18 Oct 2020 19:34:50 +0000
with message-id <e1kuesa-000ewx...@fasolo.debian.org>
and subject line Bug#965252: fixed in vcfanno 0.3.2+ds-1
has caused the Debian Bug report #965252,
regarding ITP: vcfanno -- annotate a VCF with other VCFs/BEDs/tabixed files
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
965252: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=965252
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Subject: ITP: vcfanno -- annotate a VCF with other VCFs/BEDs/tabixed files
Package: wnpp
Owner: Andreas Tille <ti...@debian.org>
Severity: wishlist
* Package name : vcfanno
Version : 0.3.2+ds
Upstream Author : Brent Pedersen and Aaron Quinlan
* URL : https://github.com/brentp/vcfanno
* License : MIT
Programming Lang: Python
Description : annotate a VCF with other VCFs/BEDs/tabixed files
Vcfanno allows you to quickly annotate your VCF with any number of INFO
fields from any number of VCFs or BED files. It uses a simple conf file
to allow the user to specify the source annotation files and fields and
how they will be added to the info of the query VCF.
.
* For VCF, values are pulled by name from the INFO field with special
cases of ID and FILTER to pull from those VCF columns.
* For BED, values are pulled from (1-based) column number.
* For BAM, depth (count), "mapq" and "seq" are currently supported.
.
Vcfanno is written in go and it supports custom user-scripts written in
Lua. It can annotate more than 8000 variants per second with 34
annotations from 9 files on a modest laptop and over 30K variants per
second using 12 processes on a server.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/vcfanno
--- End Message ---
--- Begin Message ---
Source: vcfanno
Source-Version: 0.3.2+ds-1
Done: Andreas Tille <ti...@debian.org>
We believe that the bug you reported is fixed in the latest version of
vcfanno, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 965...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated vcfanno package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 18 Jul 2020 13:49:49 +0200
Source: vcfanno
Binary: vcfanno vcfanno-examples
Architecture: source all amd64
Version: 0.3.2+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
vcfanno - annotate a VCF with other VCFs/BEDs/tabixed files
vcfanno-examples - examples for vcfanno: annotate a VCF with other
VCFs/BEDs/tabixed
Closes: 965252
Changes:
vcfanno (0.3.2+ds-1) unstable; urgency=medium
.
* Initial release (Closes: #965252)
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