Hello,
On 10/31/2012 03:48 PM, Christina Boucher wrote:
> MPI is already installed on my server… see:
> oak # rpm -qa | grep openmpi
> openmpi-devel-1.5.4-5.fc17.1.x86_64
> openmpi-1.5.4-5.fc17.1.x86_64
>
This is something specific to Fedora 17 (which I happen to be using on my
laptop).
My answ
Hello,
> make[1]: mpicxx: Command not found
To install Ray, you need an MPI library. You don't have one installed.
For example, on Fedora, the packages are openmpi, openmpi-devel, gcc-c++.
> In addition, is the the max kmer length 32? Most people are using upwards to
> 55….?
The maximum k-mer
>>
>> I am trying to use your Ray assembler. I've been using Spades (mainly
>> because I am formerly
>> from Pavel Pevzner's lab) but running out of memory on a large dataset.
>
> Maybe processing your large dataset is more amenable with a distributed
> assembler.
Spades group released a new
Thanks for the help Sebastien,
So I think the problem is that I recently refreshed the ray repository, but
not the RayPlatform. When I pulled from both, my test assembly now goes to
completion without errors.
To answer your other questions, yes the checkpoints wrote out fine, and I
didn't run wi
Hello,
On 10/29/2012 04:02 PM, Christina Boucher wrote:
> Hi,
>
> I am trying to use your Ray assembler. I've been using Spades (mainly
> because I am formerly
>from Pavel Pevzner's lab) but running out of memory on a large dataset.
Maybe processing your large dataset is more amenable with a di
