> [again, please CC the list as Ray is a community effort]
Sorry about that.
>
> How much memory do you have collectively with these 16 MPI ranks ?
512 G.
Christina
>
> On 11/01/2012 03:06 PM, Christina Boucher wrote:
>> Hi Sebastien,
>>
>> I believe that Ray chocked on my data also. In
> 512 G.
OK, you have 512 GiB, and you launched 16 Ray MPI processes.
If I do the maths, this gives a 32 GiB per process, assuming you don't
have a swap partition and assuming that you are alone on the machine.
You said that Ray is running out of memory at the place below:
> Estimated remaining
> [again, please CC the list]
Sorry, I'll make sure I do that.
>
> On 11/01/2012 02:48 PM, Christina Boucher wrote:
>> Hi Adrain and Sebastien,
>>
>> Nice to hear from McGill folk since that is my alma mater ;)
>>
>
> So you are Canadian then ?
I am ;)
>> However, spades seem to choke on t
[again, please CC the list]
On 11/01/2012 02:48 PM, Christina Boucher wrote:
> Hi Adrain and Sebastien,
>
> Nice to hear from McGill folk since that is my alma mater ;)
>
So you are Canadian then ?
> I mainly work on plant pathogen data and Arabidopsis. In the future, we plan
> on looking at B
Regarding the way Ray is run, soon Ray will be able to run on MPI only, MPI +
pthread, or
even pthread only:
As you may know, Ray ships with a library called RayPlatform, which abstracts
all the parallel stuff from the programmer. In Ray v2.0.0 and v2.1.0, the
associated RayPlatform library (ve
Hello,
You should CC the mailing list as I am sure that numerous people in
the genomics community would be interested by plant genome de novo assembly !
People at McGill University did some work on plant genomes with Ray too.
They posted their results on the list I think.
So you have something
