On 04/11/13 11:52 PM, Rob Egan wrote:
> Hello Sébastien,
>
Hi Rob,
> Regarding the maximum read length, I've found 16kb to be the limit not 64kb
> as you posted previously.
>
> I've been trying to run Ray iteratively by including the cleaned up and
> shredded contigs (to less then 50kb) from th
On 06/11/13 09:49 AM, Goor Sasson wrote:
> Dear Mailing-List,
Hi,
>
>I've chosen to use Ray Meta in order to assemble reads from a pooled
> metagenome that contains 2.5g of illumina (HiSeq2500) paired-end reads
> (read length 100bp, totalling ~250g bp).
> I need an gross estimation for the
I believe it would be very related to the genome size. Amount of reads
can usually be useful in estimating memory usage. But execution time, I
don't know if that is possible without a genome size, and for you that
would be all genome sized added up from your metagenome.
I am curious to what ot
Dear Mailing-List,
I've chosen to use Ray Meta in order to assemble reads from a pooled
metagenome that contains 2.5g of illumina (HiSeq2500) paired-end reads
(read length 100bp, totalling ~250g bp).
I need an gross estimation for the predicted execution time. The
computational platform is a Bl
