On 21/11/13 07:30 AM, Goor Sasson wrote:
> Hi Sébastien,
>
> I currently don't have the information regarding the distribution of the taxa
> in the pooled metagenome.
> In case that the abundance doesn't follow some kind of a power law
> distribution, would it
> affect the duration or correctness
Hi Sébastien,
I currently don't have the information regarding the distribution of the
taxa in the pooled metagenome.
In case that the abundance doesn't follow some kind of a power law
distribution, would it
affect the duration or correctness of the assembly ?
Thanks,
Goor
2013/11/8 Sébastien Boi
On 08/11/13 03:40 AM, Goor Sasson wrote:
> Hi Sebastien & Adrian,
>
> The Blacklight we consider to use is the one at Urbana Illinois university.
> (http://help.igb.illinois.edu/Biocluster#Cluster_Specifications).
> A rough estimation for the the total genome size is at least 5000 genomes.
> Hope
Hi Sebastien & Adrian,
The Blacklight we consider to use is the one at Urbana Illinois university.
(http://help.igb.illinois.edu/Biocluster#Cluster_Specifications).
A rough estimation for the the total genome size is at least 5000 genomes.
Hopes that these details can shed some light.
Thanks,
Go
On 06/11/13 09:49 AM, Goor Sasson wrote:
> Dear Mailing-List,
Hi,
>
>I've chosen to use Ray Meta in order to assemble reads from a pooled
> metagenome that contains 2.5g of illumina (HiSeq2500) paired-end reads
> (read length 100bp, totalling ~250g bp).
> I need an gross estimation for the
I believe it would be very related to the genome size. Amount of reads
can usually be useful in estimating memory usage. But execution time, I
don't know if that is possible without a genome size, and for you that
would be all genome sized added up from your metagenome.
I am curious to what ot
Dear Mailing-List,
I've chosen to use Ray Meta in order to assemble reads from a pooled
metagenome that contains 2.5g of illumina (HiSeq2500) paired-end reads
(read length 100bp, totalling ~250g bp).
I need an gross estimation for the predicted execution time. The
computational platform is a Bl
