sam, thanks for the report. Launchpad shows that the executable was already 
called "pdfsam" in 12.04, and as far back as 10.04.
<http://bazaar.launchpad.net/~ubuntu-branches/ubuntu/precise/pdfsam/precise/view/head:/debian/pdfsam.desktop>
<http://bazaar.launchpad.net/~ubuntu-branches/ubuntu/lucid/pdfsam/lucid/view/head:/debian/pdfsam.desktop>

So I don't know how you got a PDF Split and Merge executable that wasn't
called "pdfsam" to begin with, but you can rest easy that your renaming
didn't cause any changes to the app directory.

** Changed in: software-center (Ubuntu)
       Status: New => Invalid

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https://bugs.launchpad.net/bugs/1349009

Title:
  Renamed program name locally and Software Center & Apps Directory
  replaced original name with local one

Status in “software-center” package in Ubuntu:
  Invalid

Bug description:
  I'm under shock. In my local Ubuntu 12.04 I installed plenty of time (years) 
ago the package PDF Split and Merge through the Ubuntu Software Center. 
Locally, I renamed the executable name to "pdfsam". I know, a very bad 
practice, but for some reasons it was the quickest for me at that time. I might 
have rated/commented on the software in the USC, I don't remember. Now, with 
another computer and Ubuntu 14.04, I'm shocked to see in the USC the software 
"pdfsam" listed. Moreover, it's also in the Apps Directory:
  https://apps.ubuntu.com/cat/applications/pdfsam/

  I imagine that somehow when I rated the software, it took the name
  locally and uploaded a new entry in the db with such name? Or even
  replaced the original!? Is that possible? I cannot understand
  otherwise what's going on here.

  ProblemType: Bug
  DistroRelease: Ubuntu 14.04
  Package: software-center 13.10-0ubuntu4.1
  ProcVersionSignature: Ubuntu 3.13.0-24.46-generic 3.13.9
  Uname: Linux 3.13.0-24-generic x86_64
  ApportVersion: 2.14.1-0ubuntu3.2
  Architecture: amd64
  CurrentDesktop: Unity
  Date: Sat Jul 26 23:23:11 2014
  InstallationDate: Installed on 2014-07-25 (1 days ago)
  InstallationMedia: Ubuntu 14.04 LTS "Trusty Tahr" - Release amd64 (20140417)
  PackageArchitecture: all
  SourcePackage: software-center
  UpgradeStatus: No upgrade log present (probably fresh install)

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