This is should not be an issue anymore as fprintd saves the prints in
/var/lib/fprintd

** Changed in: libfprint (Ubuntu)
       Status: Confirmed => Fix Released

** Changed in: fingerprint-gui
       Status: Confirmed => Invalid

** Changed in: lightdm
       Status: Confirmed => Invalid

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https://bugs.launchpad.net/bugs/998367

Title:
  fingerprint login  can't access encrypted home user account

Status in Fingerprint GUI:
  Invalid
Status in Light Display Manager:
  Invalid
Status in ecryptfs-utils package in Ubuntu:
  Won't Fix
Status in libfprint package in Ubuntu:
  Fix Released

Bug description:
  In Ubuntu 12.04 (and maybe in 11.10 too) if you have an encrypted home
  directory then logging in from GDM by fingerprint does not work, the
  home directory cannot be decrypted. For non-encrypted users works fine
  but for encrypted after the fingerprint is recognized, it tries to
  start Ubuntu but seems to break and comes back to the lightDM login.
  With the password works fine.

  I have libfprint0: Installed: 1:0.4.0+git20120202-0ppa1~precise2

  Normally it should allow to login but it can access and comes back to
  the ligthDM.

  ProblemType: Bug
  DistroRelease: Ubuntu 12.04
  Package: libfprint0 20110418git-2build1
  ProcVersionSignature: Ubuntu 3.2.0-24.37~ppa3-generic-tuxonice 3.2.14
  Uname: Linux 3.2.0-24-generic-tuxonice x86_64
  NonfreeKernelModules: wl
  ApportVersion: 2.0.1-0ubuntu7
  Architecture: amd64
  Date: Sat May 12 10:41:58 2012
  EcryptfsInUse: Yes
  InstallationMedia: Ubuntu 11.10 "Oneiric Ocelot" - Release amd64 (20111012)
  SourcePackage: libfprint
  UpgradeStatus: Upgraded to precise on 2012-05-03 (8 days ago)

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