Re: [DISCUSS] Deprecate GRAM provider

2014-07-30 Thread Saminda Wijeratne
+1 On Wed, Jul 30, 2014 at 8:57 PM, Lahiru Gunathilake wrote: > +1 > > > On Wed, Jul 30, 2014 at 8:08 PM, Suresh Marru wrote: > >> Hi All, >> >> Lately we haven’t been using/updating GRAM provider. From private >> conversions with the Globus team, I inferred GRAM will not be a key focus >> f

Re: Registering ec2 application with app catalog

2014-07-30 Thread Nipun Udara
Hi suresh Thanks for the feedback. These are things i need so far nodeId executableLocation ExecutableType workingDirectory inputOutPutDirectories StandardError and StandardOut Directories CloudProvider name- for ec2 "aws-ec2" user account name in Node - for ec2 - "ec2-user" Perhaps all of these

Re: [DISCUSS] Deprecate GRAM provider

2014-07-30 Thread Lahiru Gunathilake
+1 On Wed, Jul 30, 2014 at 8:08 PM, Suresh Marru wrote: > Hi All, > > Lately we haven’t been using/updating GRAM provider. From private > conversions with the Globus team, I inferred GRAM will not be a key focus > for future development. > > I would like to recommend deprecating support for GRA

[DISCUSS] Deprecate GRAM provider

2014-07-30 Thread Suresh Marru
Hi All, Lately we haven’t been using/updating GRAM provider. From private conversions with the Globus team, I inferred GRAM will not be a key focus for future development. I would like to recommend deprecating support for GRAM beyond Airavata 0.13. Any opinions/comments/considerations? I wi

[jira] [Commented] (AIRAVATA-465) ability to interact with outputs from individual tasks while executing

2014-07-30 Thread Pamidighantam, Sudhakar V (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-465?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=14080260#comment-14080260 ] Pamidighantam, Sudhakar V commented on AIRAVATA-465: I will be out o

[jira] [Updated] (AIRAVATA-467) Allow user to set parameter options like -p -m to run jobs with GFAC

2014-07-30 Thread Suresh Marru (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-467?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Suresh Marru updated AIRAVATA-467: -- Fix Version/s: (was: 0.13) 0.14 > Allow user to set parameter options

[jira] [Updated] (AIRAVATA-465) ability to interact with outputs from individual tasks while executing

2014-07-30 Thread Suresh Marru (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-465?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Suresh Marru updated AIRAVATA-465: -- Fix Version/s: (was: 0.13) 0.15 > ability to interact with outputs fr

[jira] [Updated] (AIRAVATA-461) Allow users skip the workflow Nodes which already ran and invoke the rest of the Nodes

2014-07-30 Thread Suresh Marru (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-461?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Suresh Marru updated AIRAVATA-461: -- Fix Version/s: (was: 0.13) 0.14 > Allow users skip the workflow Nodes

[jira] [Resolved] (AIRAVATA-454) Stopping Airavata service make Xbaya notification client give lot of errors.

2014-07-30 Thread Suresh Marru (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-454?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Suresh Marru resolved AIRAVATA-454. --- Resolution: Won't Fix Since ws-messenger is not bundled with latest code bases, this is irr

[jira] [Updated] (AIRAVATA-439) GFAC/Orchestrator exception handling and notifications

2014-07-30 Thread Suresh Marru (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-439?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Suresh Marru updated AIRAVATA-439: -- Fix Version/s: (was: 0.13) 0.15 > GFAC/Orchestrator exception handlin

Re: [DISCUSS] Issues mailing list

2014-07-30 Thread Lahiru Gunathilake
+1 On Wed, Jul 30, 2014 at 5:53 PM, Suresh Marru wrote: > With no objections I will request a issues mailing list to be created. If > you think its a bad idea, please gripe. > > Suresh > > On Jul 22, 2014, at 8:36 AM, Marlon Pierce wrote: > > > +1 > > > > On 7/22/14, 6:47 AM, Suresh Marru wrot

Re: Embedded ZK

2014-07-30 Thread Lahiru Gunathilake
Hi Danushka, Thats the plan. Regards Lahiru On Tue, Jul 29, 2014 at 1:51 PM, Danushka Menikkumbura < danushka.menikkumb...@gmail.com> wrote: > Nice! :-) > > I suggest we do a quick perf test just to get a sense of it. > > Danushka > > > On Tue, Jul 29, 2014 at 11:09 PM, Lahiru Gunathilake > w

[jira] [Resolved] (AIRAVATA-437) Stdout and stderr files are read as string and will be problem if the file are big

2014-07-30 Thread Suresh Marru (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-437?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Suresh Marru resolved AIRAVATA-437. --- Resolution: Won't Fix Since the issue is a concern on tomcat deployment, resolving for now.

[jira] [Updated] (AIRAVATA-433) Providing Airavata API method to cancel a running job

2014-07-30 Thread Suresh Marru (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-433?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Suresh Marru updated AIRAVATA-433: -- Fix Version/s: (was: 0.13) 0.15 > Providing Airavata API method to ca

[jira] [Updated] (AIRAVATA-402) Optional outputs from a application

2014-07-30 Thread Suresh Marru (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-402?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Suresh Marru updated AIRAVATA-402: -- Fix Version/s: (was: 0.13) 0.14 > Optional outputs from a application

[jira] [Resolved] (AIRAVATA-388) Store the fine grain workflow status in registry and when user load the workflow we should do coloring based on the status

2014-07-30 Thread Suresh Marru (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-388?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Suresh Marru resolved AIRAVATA-388. --- Resolution: Won't Fix The code base using these features changed significantly. > Store th

[jira] [Closed] (AIRAVATA-339) [GSoC] AMQP Messaging protocol support for Airavata WS-Messenger

2014-07-30 Thread Suresh Marru (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-339?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Suresh Marru closed AIRAVATA-339. - Resolution: Fixed This GSoC project is now concluded. > [GSoC] AMQP Messaging protocol suppor

[jira] [Closed] (AIRAVATA-331) Need to develop "shadow" MPI applications that illustrate basic executions on XSEDE and similar grids.

2014-07-30 Thread Suresh Marru (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-331?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Suresh Marru closed AIRAVATA-331. - Resolution: Fixed Refer - https://github.com/SciGaP/XSEDE-Job-Scripts > Need to develop "shado

[jira] [Closed] (AIRAVATA-330) Create "shadow" applications that exercise the execution, host, and service description and execution facilities of airavata

2014-07-30 Thread Suresh Marru (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-330?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Suresh Marru closed AIRAVATA-330. - Resolution: Fixed These samples exist but outside the scope of Airavata. Refer scripts by [~yum

[jira] [Updated] (AIRAVATA-251) Integrate launched mechanim for foreach- parallel job submissions with the EC2 with oversubscribing

2014-07-30 Thread Suresh Marru (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-251?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Suresh Marru updated AIRAVATA-251: -- Fix Version/s: (was: 0.13) WISHLIST > Integrate launched mechanim for

[jira] [Updated] (AIRAVATA-282) Simple tutorial documentation and built-in test cases of the Provenance feature needs to be added to the website.

2014-07-30 Thread Suresh Marru (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-282?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Suresh Marru updated AIRAVATA-282: -- Fix Version/s: (was: 0.13) WISHLIST > Simple tutorial documentation an

[jira] [Resolved] (AIRAVATA-1119) JPARegistry tests are failing

2014-07-30 Thread Suresh Marru (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-1119?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Suresh Marru resolved AIRAVATA-1119. Resolution: Fixed These tests seem to pass now. > JPARegistry tests are failing > -

[jira] [Updated] (AIRAVATA-281) Simple tutorial documentation and built-in test cases of the For-Each feature needs to be added to the website when For-Each is ready.

2014-07-30 Thread Suresh Marru (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-281?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Suresh Marru updated AIRAVATA-281: -- Fix Version/s: (was: 0.13) WISHLIST > Simple tutorial documentation an

Re: [DISCUSS] Issues mailing list

2014-07-30 Thread Suresh Marru
With no objections I will request a issues mailing list to be created. If you think its a bad idea, please gripe. Suresh On Jul 22, 2014, at 8:36 AM, Marlon Pierce wrote: > +1 > > On 7/22/14, 6:47 AM, Suresh Marru wrote: >> Hi All, >> >> To keep the dev list focussed on discussions and reduc

[jira] [Updated] (AIRAVATA-1333) Can we have a way of searching for all the projects, experiments in the gateway?

2014-07-30 Thread Suresh Marru (JIRA)
[ https://issues.apache.org/jira/browse/AIRAVATA-1333?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Suresh Marru updated AIRAVATA-1333: --- Fix Version/s: (was: 0.13) 0.14 > Can we have a way of searching fo

Re: [SciGaP-Dev] CIPRES-Airavata integration proposal]]

2014-07-30 Thread Marlon Pierce
Your repo got mangled, probably from the first build. Just delete the contents of that directory and it should rebuild correctly. However, there may be other problems lurking, so I recommend moving ~/.m2 to ~/.m2-30July2104 or something and rebuild from scratch. Marlon On 7/30/14, 5:01 PM, K

Re: Registering ec2 application with app catalog

2014-07-30 Thread Suresh Marru
Hi Nipun, Can you tell me what all information you will need to register EC2, Rackspace? Lets quickly add it instead of you reverting to a old code. Which all JClouds providers did you try from https://jclouds.apache.org/reference/providers/ ? Are you writing a generic JClouds GFac provider w

Re: [SciGaP-Dev] CIPRES-Airavata integration proposal]]

2014-07-30 Thread K Yoshimoto
On Wed, Jul 30, 2014 at 04:52:35PM -0400, Marlon Pierce wrote: > Does it work if you use mvn -o clean install? I get a bunch of test failures, with or without -o. Should I be concerned about these? > > What do you get when you run ls -tlr > ~/.m2/repository/org/apache/airavata/airavata-clie

Re: [SciGaP-Dev] CIPRES-Airavata integration proposal]]

2014-07-30 Thread Marlon Pierce
Does it work if you use mvn -o clean install? What do you get when you run ls -tlr ~/.m2/repository/org/apache/airavata/airavata-client-api/0.14-SNAPSHOT/ ? Mine looks like this: mpierce$ ls -tlr ~/.m2/repository/org/apache/airavata/airavata-client-api/0.14-SNAPSHOT/ total 1432 -rw-r--r--

Re: [SciGaP-Dev] CIPRES-Airavata integration proposal]]

2014-07-30 Thread K Yoshimoto
I get a different error now: java-client-samples$ mvn clean install -U -DskipTests=true -f pom.xml [INFO] Scanning for projects... [INFO] [INFO] [INFO] Building Airavata Client Samples 0.14-SNAPSHOT [INFO] --

Re: [SciGaP-Dev] CIPRES-Airavata integration proposal]]

2014-07-30 Thread Marlon Pierce
Hi Kenneth-- You should first build the entire Airavata project (mvn clean install at the top level). This should fix the missing dependency problems you see below. You can then do the java-client-samples only build as often as you want from there. I just verified this, but let us know if y

Re: [SciGaP-Dev] CIPRES-Airavata integration proposal]]

2014-07-30 Thread K Yoshimoto
I wanted to play a bit more with the existing java client examples, in parallel with the new ones that are being written. I tried building them but got an error about missing files. This was run from airavata-api/airavata-client-sdks/java-client-samples. mvn clean install -DskipTests=true -f po

Registering ec2 application with app catalog

2014-07-30 Thread Nipun Udara
Hi all I have to test ec2 application registration with app catalog, and i have look at the BetterGFacImpl and seems app-catalog intergration doenot support ec2. So I would like to know whether i can continue rest of the work with the old code . regards Nipun Udara

[jira] [Created] (AIRAVATA-1368) In PHP gateway the cloned new experiment gets created at the wrong moment

2014-07-30 Thread Eroma (JIRA)
Eroma created AIRAVATA-1368: --- Summary: In PHP gateway the cloned new experiment gets created at the wrong moment Key: AIRAVATA-1368 URL: https://issues.apache.org/jira/browse/AIRAVATA-1368 Project: Airavata

Re: Notion of user roles in the PHP Reference Gateway

2014-07-30 Thread Marlon Pierce
Hi Supun-- I got things working, more or less. I had to "localize" the startup scripts to get the API server to start; see my comments in github. The PHP command line tools work fine, but I was not able to run the unit tests (see attachment). The core work looks good but you have several rou

Re: Notion of user roles in the PHP Reference Gateway

2014-07-30 Thread Marlon Pierce
Hi Supun-- I'm adding some review comments to code lines in github. Do you use your startup scripts in ./userapi/src/main/resources/bin/? Unless there is a big difference between my Mac's bash shell and your environment, these don't work. Marlon On 7/28/14, 9:48 AM, Supun Nakandala wrote: