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https://issues.apache.org/jira/browse/ATLAS-3815?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17508443#comment-17508443
]
Marcelo Baratela commented on ATLAS-3815:
-----------------------------------------
Hello,
We also experienced this issue a few times now. We tried using Gremlin to
delete the attributes but with no success.
(We are using version 2.1.0)
> Failed to execute bulk Elasticsearch mutation
> ---------------------------------------------
>
> Key: ATLAS-3815
> URL: https://issues.apache.org/jira/browse/ATLAS-3815
> Project: Atlas
> Issue Type: Bug
> Components: atlas-core
> Affects Versions: 2.0.0
> Reporter: Gaurav Sehgal
> Priority: Major
>
> Hi, I'm new to Atlas and getting this error while creating an entity. Not
> sure if it is something to do with my setup. It will be great if someone can
> help me with this.
> {code:java}
> 2020-05-27 11:21:56,775 ERROR - [pool-2-thread-4 -
> f868b26e-f7b4-4159-8c6d-4e18e5b685b3:] ~ Failed to execute bulk Elasticsearch
> mutation (ElasticSearchIndex:736)2020-05-27 11:21:56,775 ERROR -
> [pool-2-thread-4 - f868b26e-f7b4-4159-8c6d-4e18e5b685b3:] ~ Failed to execute
> bulk Elasticsearch mutation
> (ElasticSearchIndex:736)java.lang.IllegalArgumentException: Multiple entries
> with same key:
> Action.className=org.janusgraph.diskstorage.indexing.StandardKeyInformation@4fc64277
> and
> Action.className=org.janusgraph.diskstorage.indexing.StandardKeyInformation@24f6faf8
> at
> com.google.common.collect.ImmutableMap.conflictException(ImmutableMap.java:215)
> at
> com.google.common.collect.ImmutableMap.checkNoConflict(ImmutableMap.java:209)
> at
> com.google.common.collect.RegularImmutableMap.checkNoConflictInKeyBucket(RegularImmutableMap.java:147)
> at
> com.google.common.collect.RegularImmutableMap.fromEntryArray(RegularImmutableMap.java:110)
> at
> com.google.common.collect.ImmutableMap$Builder.build(ImmutableMap.java:393)
> at
> org.janusgraph.graphdb.database.IndexSerializer$IndexInfoRetriever$1.get(IndexSerializer.java:162)
> at
> org.janusgraph.diskstorage.es.ElasticSearchIndex.mutate(ElasticSearchIndex.java:703)
> at
> org.janusgraph.diskstorage.indexing.IndexTransaction$1.call(IndexTransaction.java:155)
> at
> org.janusgraph.diskstorage.indexing.IndexTransaction$1.call(IndexTransaction.java:152)
> at
> org.janusgraph.diskstorage.util.BackendOperation.executeDirect(BackendOperation.java:68)
> at
> org.janusgraph.diskstorage.util.BackendOperation.execute(BackendOperation.java:54)
> at
> org.janusgraph.diskstorage.indexing.IndexTransaction.flushInternal(IndexTransaction.java:152)
> at
> org.janusgraph.diskstorage.indexing.IndexTransaction.commit(IndexTransaction.java:133)
> at
> org.janusgraph.diskstorage.BackendTransaction.commitIndexes(BackendTransaction.java:141)
> at
> org.janusgraph.graphdb.database.StandardJanusGraph.commit(StandardJanusGraph.java:747)
> at
> org.janusgraph.graphdb.transaction.StandardJanusGraphTx.commit(StandardJanusGraphTx.java:1379)
> at
> org.janusgraph.graphdb.tinkerpop.JanusGraphBlueprintsGraph$GraphTransaction.doCommit(JanusGraphBlueprintsGraph.java:298)
> at
> org.apache.tinkerpop.gremlin.structure.util.AbstractTransaction.commit(AbstractTransaction.java:104)
> at
> org.apache.atlas.repository.graphdb.janus.AtlasJanusGraph.commit(AtlasJanusGraph.java:202)
> at
> org.apache.atlas.GraphTransactionInterceptor.doCommit(GraphTransactionInterceptor.java:155)
> at
> org.apache.atlas.GraphTransactionInterceptor.doCommitOrRollback(GraphTransactionInterceptor.java:150)
> at
> org.apache.atlas.GraphTransactionInterceptor.invoke(GraphTransactionInterceptor.java:89)
> at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
> at
> org.springframework.aop.framework.CglibAopProxy$DynamicAdvisedInterceptor.intercept(CglibAopProxy.java:671)
> at
> org.apache.atlas.repository.store.graph.v2.AtlasEntityStoreV2$$EnhancerBySpringCGLIB$$660f9428.createOrUpdate(<generated>)
> at org.apache.atlas.web.rest.EntityREST.createOrUpdate(EntityREST.java:293)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:498) at
> com.sun.jersey.spi.container.JavaMethodInvokerFactory$1.invoke(JavaMethodInvokerFactory.java:60)
> at
> com.sun.jersey.server.impl.model.method.dispatch.AbstractResourceMethodDispatchProvider$TypeOutInvoker._dispatch(AbstractResourceMethodDispatchProvider.java:185)
> at
> com.sun.jersey.server.impl.model.method.dispatch.ResourceJavaMethodDispatcher.dispatch(ResourceJavaMethodDispatcher.java:75)
> at
> com.sun.jersey.server.impl.uri.rules.HttpMethodRule.accept(HttpMethodRule.java:302)
> at
> com.sun.jersey.server.impl.uri.rules.ResourceClassRule.accept(ResourceClassRule.java:108)
> at
> com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
> at
> com.sun.jersey.server.impl.uri.rules.RootResourceClassesRule.accept(RootResourceClassesRule.java:84)
> at
> com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1542)
> at
> com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1473)
> at
> com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1419)
> at
> com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1409)
> at
> com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:409)
> at
> com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:558)
> at
> com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:733)
> at javax.servlet.http.HttpServlet.service(HttpServlet.java:790) at
> org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:845) at
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1712)
> at org.apache.atlas.web.filters.AuditFilter.doFilter(AuditFilter.java:100)
> at
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1699)
> at
> org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:317)
> at
> org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:127)
> at
> org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:91)
> at
> org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
> at
> org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:114)
> at
> org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
> at
> org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:137)
> at
> org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
> at
> org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:111)
> at
> org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
> at
> org.apache.atlas.web.filters.AtlasCSRFPreventionFilter$ServletFilterHttpInteraction.proceed(AtlasCSRFPreventionFilter.java:235)
> at
> org.apache.atlas.web.filters.AtlasCSRFPreventionFilter.handleHttpInteraction(AtlasCSRFPreventionFilter.java:177)
> at
> org.apache.atlas.web.filters.AtlasCSRFPreventionFilter.doFilter(AtlasCSRFPreventionFilter.java:190)
> at
> org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
> at
> org.apache.atlas.web.filters.AtlasAuthenticationFilter.doFilter(AtlasAuthenticationFilter.java:358)
> at
> org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
> at
> org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:170)
> at
> org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
> at
> org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:63)
> at
> org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
> at
> org.apache.atlas.web.filters.StaleTransactionCleanupFilter.doFilter(StaleTransactionCleanupFilter.java:55)
> at
> org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
> at
> org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilterInternal(BasicAuthenticationFilter.java:158)
> at
> org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
> at
> org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
> at
> org.apache.atlas.web.filters.AtlasKnoxSSOAuthenticationFilter.doFilter(AtlasKnoxSSOAuthenticationFilter.java:146)
> at
> org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
> at
> org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:200)
> at
> org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
> at
> org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:116)
> at
> org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
> at
> org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:66)
> at
> org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
> at
> org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
> at
> org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:105)
> at
> org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
> at
> org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:56)
> at
> org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
> at
> org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
> at
> org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:214)
> at
> org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:177)
> at
> org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:347)
> at
> org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:263)
> at
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1691)
> at
> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:582) at
> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
> at
> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
> at
> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
> at
> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1180)
> at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:512)
> at
> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)
> at
> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1112)
> at
> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:134)
> at org.eclipse.jetty.server.Server.handle(Server.java:534) at
> org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:320) at
> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:251)
> at
> org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:273)
> at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:95) at
> org.eclipse.jetty.io.SelectChannelEndPoint$2.run(SelectChannelEndPoint.java:93)
> at
> org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.executeProduceConsume(ExecuteProduceConsume.java:303)
> at
> org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.produceConsume(ExecuteProduceConsume.java:148)
> at
> org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.run(ExecuteProduceConsume.java:136)
> at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
> at java.lang.Thread.run(Thread.java:748)
> 2020-05-27 11:24:40,701 ERROR - [pool-2-thread-6 -
> 5bda6e16-7c0a-4fb9-95ba-0145b0b339d2:] ~ graph rollback due to exception
> AtlasBaseException:Instance __AtlasUserProfile with unique attribute
> {name=admin} does not exist (GraphTransactionInterceptor:166)
> 2020-05-27 11:32:31,414 ERROR - [Thread-18:] ~ Evicted
> [1@c0a817c810-atlas-85898cb689-wvqnm1] from cache but waiting too long for
> transactions to close. Stale transaction alert on:
> [standardjanusgraphtx[0x71695c69], standardjanusgraphtx[0x017e073a],
> standardjanusgraphtx[0x29be305b], standardjanusgraphtx[0x66ccc0e5],
> standardjanusgraphtx[0x041cfa55], standardjanusgraphtx[0x333a04d0],
> standardjanusgraphtx[0x12484503], standardjanusgraphtx[0x54fab456],
> standardjanusgraphtx[0x087b87d6], standardjanusgraphtx[0x31b046be],
> standardjanusgraphtx[0x065bf1b5], standardjanusgraphtx[0x70522062],
> standardjanusgraphtx[0x0a73fd23], standardjanusgraphtx[0x7434a8c5],
> standardjanusgraphtx[0x017d9a6e], standardjanusgraphtx[0x1e9319e0],
> standardjanusgraphtx[0x0d7c8a0f], standardjanusgraphtx[0x46658252],
> standardjanusgraphtx[0x31a166bd], standardjanusgraphtx[0x7c74a988],
> standardjanusgraphtx[0x72c67b3a], standardjanusgraphtx[0x05f9e0a4]]
> (ManagementLogger$SendAckOnTxClose:271)
> 2020-05-27 11:32:41,426 ERROR - [Thread-19:] ~ Evicted
> [2@c0a817c810-atlas-85898cb689-wvqnm1] from cache but waiting too long for
> transactions to close. Stale transaction alert on:
> [standardjanusgraphtx[0x71695c69], standardjanusgraphtx[0x017e073a],
> standardjanusgraphtx[0x29be305b], standardjanusgraphtx[0x66ccc0e5],
> standardjanusgraphtx[0x041cfa55], standardjanusgraphtx[0x333a04d0],
> standardjanusgraphtx[0x12484503], standardjanusgraphtx[0x54fab456],
> standardjanusgraphtx[0x087b87d6], standardjanusgraphtx[0x31b046be],
> standardjanusgraphtx[0x065bf1b5], standardjanusgraphtx[0x70522062],
> standardjanusgraphtx[0x0a73fd23], standardjanusgraphtx[0x7434a8c5],
> standardjanusgraphtx[0x017d9a6e], standardjanusgraphtx[0x1e9319e0],
> standardjanusgraphtx[0x0d7c8a0f], standardjanusgraphtx[0x46658252],
> standardjanusgraphtx[0x31a166bd], standardjanusgraphtx[0x7c74a988],
> standardjanusgraphtx[0x72c67b3a], standardjanusgraphtx[0x05f9e0a4]]
> (ManagementLogger$SendAckOnTxClose:271){code}
> Thanks
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