Re: BEAM-6855

2021-02-23 Thread Ahmet Altay
Hemali, would this be a reasonable workaround for your problem? /cc +Kenneth Knowles - In case there is an alternative workaround to BEAM-6855. /cc +Cosmin Arad On Thu, Feb 18, 2021 at 1:27 PM Brian Hulette wrote: > I added JvmInitializer [1] to do some one-time initialization per JVM > befor

Re: Should we support VCF IO on Python 3?

2021-02-23 Thread Cory McLean
+1 to removing from the codebase, and if it becomes of interest again, porting to cyvcf2. But most genomics workflows are not using Beam at the moment. On Tue, Feb 23, 2021 at 1:12 AM Chamikara Jayalath wrote: > Given that we don't support Python 2 anymore, it sounds like this is just > broken c

Re: FileIO.Write fails silently

2021-02-23 Thread Tapan Upadhyay
Yes we have checkpointing enabled in our cluster. Pipeline runs fine when I do a restart without making any code changes but after adding a DoFn class (that too not used in pipeline), we have observed pipeline still reads from kafka, does windowing and distinct but does not write to S3. I have

Re: Do we need synchronized processing time? / What to do about "continuation triggers"?

2021-02-23 Thread Robert Bradshaw
On Tue, Feb 23, 2021 at 1:07 AM Jan Lukavský wrote: > First, +1 to the conclusion of this thread. > > One note regarding the composite transforms and triggers *inside* those > transforms - I think that propagating the triggering from input PCollection > might be even dangerous and composite PTran

Re: Do we need synchronized processing time? / What to do about "continuation triggers"?

2021-02-23 Thread Jan Lukavský
First, +1 to the conclusion of this thread. One note regarding the composite transforms and triggers *inside* those transforms - I think that propagating the triggering from input PCollection might be even dangerous and composite PTransforms that would be sensitive to the change of triggering