I've used the demos as a resource for building web applications with Ctakes and
would suggest taking a look at http://healthnlp.github.io/examples/
-Original Message-
From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu]
Sent: Monday, May 16, 2016 3:00 PM
To: dev@ctakes.apache.org
Hi Jan,
It looks like ou are basically trying to run the equivalent of:
ctakes-clinical-pipeline/desc/../analysis_engine/CuisOnlyPlaintextUMLSProcessor.xml
You could try swapping out the Aggregate... for that one and see what happens.
Sean
-Original Message-
From: Jan Zieher [mailto:jzie
Hey,
I created a java webproject in netbeans 8.1 and integrated ctakes with the libs
of the 3.2.2 binaries download, its desc and resource folder into the WEB-INF
folder.
I would like to run the AggregatePlaintextFastUMLSProcessor AE. Through
debugging the code below worked, if I comment the fo
Hi John,
There is a dictionary database builder in sandbox
http://svn.apache.org/repos/asf/ctakes/sandbox/dictionary-gui/
Basically, throw it into your ide and launch the main class. You will see the
gui. Point to your umls root directory and your ctakes installation root.
Select your vocabu
It seems odd they would require repeated checke when you can download the whole
thing for input into a db with mmsys. How is the documentation on building the
fast lookup from a local copy of the umls? A quick glance at the website didnt
reveal much. ytex reportedly works this way but Ive been
The Maven plugin for Eclipse that ships with modern Eclipse installations does
automatically derive them. No additional configuration is usually necessary.
There is an issue (and it even does have a patch attached):
https://issues.apache.org/jira/browse/CTAKES-386
If anybody feels like giving
Having a hosted web site which hosts UMLS resources and checks for a license
before downloading locally(via the NLM/UMLS license validation web service) is
indeed the norm and a more common way. (YTEX originally and UMLS itself does
this when one downloads their resources.) The responsibility
+1
I think there was already a Jira to remove the Eclipse specific settings; or at
least make it automatically derived from the pom.xml’s.
—Pei
> On May 13, 2016, at 11:48 AM, Richard Eckart de Castilho
> wrote:
>
> Hi all,
>
> when checking out the sources of cTAKES from SVN with Eclipse, mo
The agreement that the ctakes core group was able to achieve with the NLM
(distributor of UMLS) was that ctakes would check a user's access rights upon
every use of any database derived from the UMLS. The reason for this was that
the NLM did not want one valid UMLS user to download the database
I haven't tried it and is a guess based on reading the code, but you might be
able to change the dictionary implementation name in the xml file from
UmlsJdbcRareWordDictionary to ConceptFactory, since Umls factory implements
from ConceptFactory.
-Original Message-
From: Miller, Timothy
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