RE: Regarding cTakes version upadtion [EXTERNAL]

2017-12-01 Thread Finan, Sean
I just checked the wiki on 3.2 for information on setting the umls values. "[it] has been weighed, it has been measured, and it has been found wanting." We need to remedy this. There are instructions here https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.2+User+Install+Guide#cTAKES3.2

RE: Regarding cTakes version upadtion [EXTERNAL]

2017-12-01 Thread Gandhi Rajan Natarajan
You can explode the war file to a folder and edit the xml file under WEB-INF\classes\org\apache\ctakes\dictionary\lookup\fast with proper UMLS username and password. Then you can deploy the exploded folder in Tomcat. Regards, Gandhi -Original Message- From: Ks Sunder [mailto:shyam...@

RE: Drug NER - Empty Dosage/Strength/Frequency Values [EXTERNAL]

2017-12-01 Thread Finan, Sean
Hi Chalal Arora, You can change values in a piper file in two ways. To set a value "globally" use the "set" command: set DISTANCE=14 set BOUNDARY_ANN_TYPE=14 To set a value just for one annotator enter it on the "add" line: add DrugMentionAnnotator DISTANCE=14 BOUNDARY_ANN_TYPE=14 If the DrugMe

Re: Regarding cTakes version upadtion [EXTERNAL]

2017-12-01 Thread Ks Sunder
Hi, when i am using cTakes3.2.2 after maven install , cTakes all modules available at src folder in that i changed username and pwd. but cTakes4.0 is jsut created war file of cTakes modules .. i am confused how can change username and pwd in cTakes4.0..? can we have any properties files for that...

Re: Drug NER - Empty Dosage/Strength/Frequency Values

2017-12-01 Thread Chahal Arora
Hi All, While debugging DrugMentionAnnotator.java, I found that the issue was coming because the value of variables iWindowSize, iBoundaryAnnType have been set to -1 by default. The value of these variables does not change because in the following code I get null values for *windowSize* and *bound

RE: uimafit version and commit messages [EXTERNAL]

2017-12-01 Thread Finan, Sean
Hi Alex, Thank you for the heads-up. I did notice your checkin and you have nothing but my respect for taking the initiative. I haven't tested the update on another project for any ill happenstance, but a colleague and ctakes pmc (Chen Lin, master of doctimerel among other things) did run (po