Re: Interpret context out of clinical note [EXTERNAL]

2017-12-04 Thread Bhagwat Posane
Hello Sean, et al, Does anyone have chance to update on my issues mentioned in thread ? On 29 November 2017 at 18:35, Bhagwat Posane wrote: > Sure, Sean. Please ! > > On 28 November 2017 at 23:16, Finan, Sean edu> wrote: > >> Hi

RE: cTAKES as REST service [EXTERNAL]

2017-12-04 Thread Gandhi Rajan Natarajan
Hi Sean, Tim, Alex, Matthew, James and All, I have placed the first cut version of cTAKES REST module in the following path - https://github.com/GoTeamEpsilon/ctakes-rest-service/tree/master/ctakes-web-rest/ Things pending in the module: 1) Index Page to test the rest module using AJAX call 2)

Identifying multiple concepts from a single text

2017-12-04 Thread Chahal Arora
Hi All, Is there an annotator present in cTAKES that can identify multiple concepts from a single text. For examples, when someone writes Blood pressure 120/80, the annotator gives the result as Systolic Blood pressure = 120 and Diastolic Blood Pressure = 80. I want to have a generic solution

Re: Drug NER - Empty Dosage/Strength/Frequency Values

2017-12-04 Thread Chahal Arora
Hi Sean and Taylor, Thank you for the help. @Taylor I was gettting exactly same output and exception described by you and the adding " add org.apache.ctakes.drugner.ae.DrugMentionAnnotator STATUS_BOUNDARY_ANN_TYPE="org.apache.ctakes.typesystem.type.textsem.MedicationMention" " in the piper file

Re: Drug NER - Empty Dosage/Strength/Frequency Values

2017-12-04 Thread Taylor Cassidy
Chahal, By the way, I was having a similar problem, but I don't think iBoundaryAnnType has to do with offsets, but rather refers to an Annotation type. when it's set to -1, generateDrugMentionsAndAnnotations throws an exception, which is ArrayOutOfBounds stemming from