Hi All,
Is there an option currently available with CTAKES for extracting patient name,
age etc. from Medical records and lab reports?
Thanks,
Abilash Mathew
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No, there is not that I'm aware of. While that information is often in
the note, it is also usually in structured fields where it can be
extracted with ~100% accuracy so it's not a high priority for NLP.
Thanks
Tim
On Thu, 2017-12-21 at 09:26 +, abilash.mat...@cognizant.com wrote:
> Hi All,
>
Hi Gandhi, Thank you for your help. It's working now. In the
customDictionary.xml, I changed
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary to
org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
and org.apache.ctakes.dictionary.lookup2.concept.JdbcConc
That makes sense.
What would be a good way to extract information about the “structured fields”
from the notes. Is there a specific module for it.
Thanks,
Nitesh
> On Dec 21, 2017, at 4:24 AM, Miller, Timothy
> wrote:
>
> No, there is not that I'm aware of. While that information is often
By structured fields I mean non-note sources. Notes might be stored in
a database and other columns/tables in that database will contain
patient metadata, such as sex, birthdate, insurance status, etc.
Extracting this information is probably institution-specific. If you
don't have access to this ki
I feel Sean and Tim will be the right persons to answer this.
Regards,
Gandhi
-Original Message-
From: Chahal Arora [mailto:chahal.ar...@raxa.com]
Sent: Thursday, December 21, 2017 7:32 PM
To: dev@ctakes.apache.org
Subject: Re: Custom Dictionary connected to mysql
Hi Gandhi, Thank you fo
Do you want your lookup to be case sensitive? If so then new code would be
required. The lookup is case insensitive because it does expect the
dictionary/database to contain only lowercase entries. If you are ok with the
case insensitivity then I propose that you modify your database.
Sean
Hi Sean,
I wanted the lookup to be case insensitive. Also wanted to go away with the
restriction of putting enteries in lowercase in database like the way it
was working with BSV.
But if lowercase enteries are expected in database then I guess modifying
database will work for me.
On Fri, 22 Dec