Dear cTAKES developer,
This is Masoud Rouhizadeh from JHU. I'm leading the NLP effort at the Institute
for Clinical and Translational Research and work on enterprise-level NLP
projects at Johns Hopkins Medicine. One of the major goals we are targeting is
de-identification of a large number of no
Hi Masoud, we had a similar requirement to identify patient names in the
narratives text and I had a discussion with Sean Finan on patient name
identification feature in cTAKES. What he told at that point in time was
cTAKES dint supported patient name identification feature. Also as far as I
know,
Hi All,
ctakes-scrubber is not in any ctakes release and it is not in the main
repository. It never went beyond experimental and resides within the ctakes
sandbox. https://svn.apache.org/repos/asf/ctakes/sandbox/
>From what I recall, scrubber does not have "real" name replacement, but
>inste
Thanks for the insight Sean.
On Wednesday, July 17, 2019, Finan, Sean
wrote:
> Hi All,
>
> ctakes-scrubber is not in any ctakes release and it is not in the main
> repository. It never went beyond experimental and resides within the
> ctakes sandbox. https://svn.apache.org/repos/asf/ctakes/san
How can I un-subscribe from this? Any help would be kindly appreciated.
- Ravi
> On Jul 17, 2019, at 12:53 PM, gandhi rajan wrote:
>
> Thanks for the insight Sean.
>
> On Wednesday, July 17, 2019, Finan, Sean
> wrote:
>
>> Hi All,
>>
>> ctakes-scrubber is not in any ctakes release and it i
My group has done considerable work on de-identification and on synthesizing
pseudonymous data to replace the original PHI with plausible but inauthentic
data (sometimes confusingly called re-identification).
One conclusion I reached from that work is that the de-identification and the
pseudon
We had some similar work on de-id and "re-id".
The impact on performance for NER tasks was minimal.
https://academic.oup.com/jamia/article/20/1/84/2909298
The replacing PHI task was employed with data based on US CENSUS distribution.
https://www.sciencedirect.com/science/article/pii/S1532046414
Hi,
I am building the cTAKES developer version using the following command.
mvn --fail-at-end --errors --update-snapshots clean install sonar:sonar
-DskipTests=false -Dsonar.scm.provider=svn -Dsonar.host.url=
https://builds.apache.org/analysis
I also tried the following command:
mvn clean inst
Hi Ravi,
Send out an email to dev-unsubscr...@ctakes.apache.org to un-subscribe.
On Wednesday, July 17, 2019, Ravi Tejwani
wrote:
> How can I un-subscribe from this? Any help would be kindly appreciated.
>
> - Ravi
>
> > On Jul 17, 2019, at 12:53 PM, gandhi rajan
> wrote:
> >
> > Thanks for th
Hi Maral,
I could see the following error in the stacktrace,
java.lang.NoClassDefFoundError:
javax/activation/MimeTypeParseException
Could be an issue related to missing jar or classpath. Between, from where
did you check out the source code from?
On Thursday, July 18, 2019, Maral Amir wrote:
Hi Gandhi,
Thank you for your reply. I installed the source code following the
Developer's install guide. ( subversion + Git and then Rebase after svn
checkin)
https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+4.0+Developer+Install+Guide
I should mention I have not worked with Java and Ma
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