Re: using umls dictionary lookup offline

2018-02-14 Thread Jessica Glover
Razu, I'm not totally sure if this is up-to-date, but here's a wiki page that I hope will be helpful. https://cwiki.apache.org/confluence/display/CTAKES/UMLS+MS+SQL+Server+Installation Note that you will have to have a UMLS license account to be able to download UMLS data. You can sign up for it

Re: UIMA 3.0.0

2017-02-14 Thread Jessica Glover
Here's a link to the user's guide with the overview, changes, etc. http://uima.apache.org/d/uimaj-3.0.0-alpha/version_3_users_guide.html On Tue, Feb 14, 2017 at 12:12 PM, David Kincaid wrote: > Trello board seems like a good enough idea. I'm willing to help out with > some testing too. > > - Da

RE: LVG documentation

2016-02-16 Thread Jessica Glover
so the word "doses" in text may incorrectly be tagged as the > drug. Chen Lin gets credit for discovering this specific example. > > Sean > > -Original Message- > From: Jessica Glover [mailto:glover.jessic...@gmail.com] > Sent: Monday, February 15, 2016 3:3

LVG documentation

2016-02-15 Thread Jessica Glover
Hello, I would like to add a brief explanation and an example in the LVG documentation as to why it says in the Component Use Guide that LVG is effectively required for good results in dictionary lookup, but before I do, I'd like to understand it a bit better myself. I have an example sentence th

Re: Contributing to documentation

2016-02-10 Thread Jessica Glover
Thank you. I'm excited to contribute. Is there a process by which my contributions should get "voted in" or am I free to just start editing? - Jessica On Feb 10, 2016 9:28 AM, "Pei Chen" wrote: > User Jessica Glover (jgloves) Added to: > https://cwiki.apach

Re: Clinical Element Model normalization component

2016-02-10 Thread Jessica Glover
e.org/mod_mbox/ctakes-dev/201508.mbox/%3ccol130-w826156991f6c8e4085da7afb...@phx.gbl%3E > Chenpei said that AggregatePlaintextFastUMLSProcessor.xml should already > have > the Drug NER included. > > Regards, > - PhĂșc > > > > > 2016-02-10 3:51 GMT+07:00 Jessica Glover : >

Re: Contributing to documentation

2016-02-10 Thread Jessica Glover
Hi Pei, I'm not sure what my confluence ID is. I log in with this email address, and I can be found under Jessica Glover in a People search. - Jessica This would be great. What is your confluence id (anyone should be able to create an account)? --Pei On Tue, Feb 9, 2016 at 7:49 AM, Je

Re: Clinical Element Model normalization component

2016-02-09 Thread Jessica Glover
I believe you need to add an annotator like DrugAggregateCDAProcessor to the pipeline to get the annotations you seek. I will investigate and write more soon. - Jessica G. On Feb 9, 2016 2:31 PM, "Miller, Timothy" < timothy.mil...@childrens.harvard.edu> wrote: > I'm not that familiar with that mo

Contributing to documentation

2016-02-09 Thread Jessica Glover
I am happy to write as well as create diagrams. Thanks, Jessica Glover