Re: cTAKES Pipeline [EXTERNAL]

2019-07-22 Thread Siamak Barzegar
examples-res modules. You > > can > > > look at the different "Hello World" examples. > > > > > > Since you are playing with maven, you can run the profile > "runPiperGui". > > > mvn clean compile -DskipTests -PrunPiperGui > > > > > > Sean > > > > > > > > > > > > From: Maral Amir > > > Sent: Thursday, July 18, 2019 2:29 PM > > > To: dev@ctakes.apache.org > > > Subject: cTAKES Pipeline [EXTERNAL] > > > > > > Hi, > > > > > > I just build my developer version of cTAKES with the help of wonderful > > > cTAKES developers. > > > > > > For my next step, I would appreciate if somebody direct me to a right > > path. > > > I am planning to process text clinical documents through the entire > > > pipeline to generate xml output. I see the website suggest walking > > through > > > the Default Clinical Pipeline. I understand there are also multiple git > > > repositories on developed command line tool based Apache cTAKES. > > > My final goal is to integrate cTAKES with some Python packages( OCR, > > etc.) > > > into one pipeline and have some form of web service at the end. I would > > > deeply appreciate any suggestions. > > > > > > Thanks, > > > Maral > > > > > > -- Siamak Barzegar, PhD. Senior Research Engineer. Biomedical Text Mining Unit. Barcelona Supercomputing Centre

Re: Accessing the External Resource from the UimaContext without Using XML descriptor [EXTERNAL]

2019-06-28 Thread Siamak Barzegar
er difference and that name stuck. > > There may be other solutions, but those are what come to mind right now. > > Sean > > From: Siamak Barzegar > Sent: Tuesday, June 25, 2019 11:46 AM > To: dev@ctakes.apache.org > Subject: Re: Accessin

Re: Accessing the External Resource from the UimaContext without Using XML descriptor [EXTERNAL]

2019-06-25 Thread Siamak Barzegar
ginal (without special views) specify add( component, > Collections.emptyList(), parameters ). The method usage add( component ) > still exists. Apparently I was too lazy to properly refactor the method > with the original signature ... > > I hope that helps, > Sean > >

Accessing the External Resource from the UimaContext without Using XML descriptor

2019-06-25 Thread Siamak Barzegar
I would like to use different cTAKES' components by using PipelineBuilder (exactly the same in HelloWorldBuilderRunner.java). But the problem is (As I understand it), PipelineBuilder does not read XML descriptor of the component. I want to use the Dictionary Lookup component (DictionaryLookupannota

Re: Convert type system of a component to cTakes typesysem [EXTERNAL]

2019-06-12 Thread Siamak Barzegar
akes a call to Heideltime, and > then iterates over types output from Heideltime and creating the equivalent > UIMA types. If you have some more info on what sort of conversion you had > in mind let me know. > Tim > > -Original Message- > From: Siamak Barzegar > Sent:

Convert type system of a component to cTakes typesysem

2019-06-06 Thread Siamak Barzegar
Dear All, I want to integrate HeidelTime project ( https://github.com/HeidelTime/heideltime) as a component into cTakes to use it with other components in ctakes (to build a pipeline for my task) But the problem is two projects (HeidelTime and cTakes) have different typesystems. is there anyway t