I prefer option 1. Largely because of the prominence of ‘downloads’ and
‘examples’.
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
britt.fi...@wiredinformatics.com
> On Dec 31, 2014, at 2:53 PM, Chen, Pei wrote:
>
> Hi folks,
&
Hi Mohammad, the resources should go in the corresponding “-res” project.
Cheers,
Britt
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
britt.fi...@wiredinformatics.com
> On Jan 6, 2015, at 11:03 PM, Mohammad Alodadi wrote:
>
>
Hi Mitch,
Are you on a 32 bit machine or a 64 bit machine?
If its 32 you might want to upgrade that as well.
You can also try lowering the Xmx to 2500M but it’ll be tight.
Cheers,
Britt
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
ck to the dev list while getting it running
in ctakes.
Cheers,
Britt
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
britt.fi...@wiredinformatics.com
> On Mar 20, 2015, at 7:57 PM, andy mcmurry wrote:
>
> Britt et al: here is a
room numbers in documents and identifying a
persons title in documents.
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
britt.fi...@wiredinformatics.com
> On Mar 24, 2015, at 12:09 AM, Rohit Shinde
> wrote:
>
> Thanks Britt! I am
org.apache.ctakes.smokingstatus.type.NonSmokerNamedEntityAnnotation;
org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation;
In partiuclar: SmokingDocumentClassification.getClassification().
Cheers,
Britt
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
britt.fi...@wiredinformatics.com
You can find details on unsubscribing here:
https://ctakes.apache.org/mailing-lists.html
<https://ctakes.apache.org/mailing-lists.html>
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
britt.fi...@wiredinformatics.com
> On Apr 9, 20
bf1.yahoo.com%3E>
I don't recall if this has already been fixed in trunk or not. If not, would
you mind opening a Jira ticket for it and we can be sure to fix it in the next
release?
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.c
There is a Sonar plugin for Jenkins that's pretty rad.
Sent from my iPhone
> On May 6, 2015, at 10:57 AM, Masanz, James J. wrote:
>
>
> Sorry, I wasn't clear, when I said "at build time", I meant the Jenkins
> automated build.
>
>
> -Original Message-
> From: Finan, Sean [mailto:s
c35...@chexmbx4a.chboston.org%3E>
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
britt.fi...@wiredinformatics.com
> On May 13, 2015, at 1:13 AM, Sangram Patil wrote:
>
> Hi,
>
> For https://uts.nlm.nih.gov/ I have got lice
,
Britt
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
britt.fi...@wiredinformatics.com
> On Jun 21, 2015, at 2:45 PM, Miller, Timothy
> wrote:
>
> Sean wrote the fast version and may be able to answer your specific
> qu
these edits and check them in whether that means updating the
CuiCodeUtil class or creating an entirely new BSVConceptFactory if thats what
makes the most sense.
Thoughts?
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
bri
NLM + 300
In that case, do we need to store it as a Pair at all or is just storing the
prefix in a String[] sufficient?
I’m happy to start working on this unless you have a preference for splitting
it out into multiple tasks.
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Bo
I don’t think that is too much of a constraint, at least initially, to have all
CUI values a consistent length for a given prefix.
Thanks Sean, let me know if there is any part of this you’d like a hand with.
Cheers,
Britt
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA
Absolutely. I’ll create it now.
Thanks!
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
britt.fi...@wiredinformatics.com
> On Jul 9, 2015, at 3:12 PM, Finan, Sean
> wrote:
>
> Hi Britt,
>
> I’ve got some code and
Linking ticket here for completeness
https://issues.apache.org/jira/browse/CTAKES-368
<https://issues.apache.org/jira/browse/CTAKES-368>
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
britt.fi...@wiredinformatics.com
> On Jul 9, 2
Thanks, just finished testing and closed the ticket.
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
britt.fi...@wiredinformatics.com
> On Jul 9, 2015, at 3:44 PM, Finan, Sean
> wrote:
>
> Checked in, please give it a test a
.
I’ll definitely report back if I notice any performance change given the new
logic though.
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
britt.fi...@wiredinformatics.com
> On Jul 10, 2015, at 5:31 PM, Finan, Sean
> wrote:
>
> G
the same components?
Let me know if I read into one of these points wrong. Since these items would
likely cause large changes I am looking to get some feedback before moving
forward.
Cheers,
Britt
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
particular gene or disorder
grouping. The term I mentioned was just meant to be an example.
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
britt.fi...@wiredinformatics.com
> On Jul 15, 2015, at 8:57 AM, Finan, Sean
> wrote:
>
&
Hi Sean, do you want a ticket for the PTB update?
Cheers,
Britt
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
britt.fi...@wiredinformatics.com
> On Jul 15, 2015, at 9:07 AM, britt fitch
> wrote:
>
> Thanks Sean.
>
>
have” or “no evidence of” or
the like to confirm.
Was an image pasted after "The SignSymptomMention for numbness” it renders as a
?-box for me
Hope that helps.
Cheers,
Britt
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
bri
I am interested in participating!
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
britt.fi...@wiredinformatics.com
> On Sep 16, 2015, at 4:23 PM, Pei Chen wrote:
>
> Hi,
> I hope everyone had a great summer. I just wanted to r
Did you declare the new Age type in TypeSystem.xml?
You may want to extend one of the existing types like EntityMention or
IdentifiedAnnotation.
Cheers,
Britt
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
britt.fi...@wiredinformatics.com
apy”
“pathology” > “pathology department” , “pathology procedure”
“exercise” > “exercise pain management”
Those are just some quick examples. It depends heavily on what the ontology
contains though.
Cheers,
Britt
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 0
I like the blog approach.
I think it will help direct the creation of various guide-type documentation
going forward.
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
britt.fi...@wiredinformatics.com
> On Dec 8, 2015, at 4:41 PM, Mil
+1 here as well.
On Tue, Sep 3, 2013 at 11:47 AM, Pei Chen wrote:
> James,
> +1
> [x] +1 Release the packages as Apache cTAKES 3.1.0
>
> Below is what I verified so far (plan to go through the documentation in
> parallel):
>
> Tested:
> 1- Downloaded src and bin tz
> 2- Verified Signatures
> 3-
+1 to Andy's suggestion. Ease of initiation + community engagement =
positive growth.
On Tue, Oct 29, 2013 at 6:09 PM, Miller, Timothy <
timothy.mil...@childrens.harvard.edu> wrote:
> I think this is also an area where Maven integration was a small step
> backwards (I greatly appreciate the step
+1
On Mon, Dec 2, 2013 at 1:16 PM, Karthik Sarma wrote:
> +1
>
>
>
>
>
> --
> Karthik Sarma
> UCLA Medical Scientist Training Program Class of 20??
> Member, UCLA Medical Imaging & Informatics Lab
> Member, CA Delegation to the House of Delegates of the American Medical
> Association
> ksa...@k
There is some documentation in the dictionary2 module under
/doc/DictionaryLookupHelp.{txt | docx} that gives some some details of the
different lookup implementation options within that module that I found helpful.
On Jun 9, 2014, at 5:17 PM, Masanz, James J. wrote:
>
> Will ctakes-dictiona
n for those who are curious).
>
> --Pei
>
>> -Original Message-
>> From: britt fitch [mailto:britt.fi...@gmail.com]
>> Sent: Monday, June 09, 2014 5:42 PM
>> To: dev@ctakes.apache.org
>> Subject: Re: Preparing for an Apache cTAKES 3.2 Release?
>>
My preference is to treat the list row number as outside of the sentence of
interest.
Or if it is necessary to be included in a sentence, have it be a sentence
on its own.
That won't be as straightforward as splitting on a period in cases
like "2. Magnesium
oxide 400 mg p.o. daily."
In cases where
ce).
>> This behavior is probably strongly dependent on the annotations we give the
>> sentence detector so as I'm prepping new training data I should have a
>> default in mind.
>>
>> Does anyone have any objections to changing the sentence detector behavior
>> to break list headers
llowed by a period or a
> newline it is considered a sentence break and otherwise it is part of the
> sentence.
>
> e.g.
>
> 1. 20 mg flomax
>
> is two sentences, while:
>
> 1 - 20 mg flomax
>
> is one sentence.
>
> For headings:
>
> Allergies: Pt i
We have been actively working on a lab annotator at Wired Informatics that we
are planning to contribute back to the community once its fully tested.
We will post to the dev list when we have a date that that becomes available.
Cheers,
Britt
On Aug 4, 2014, at 5:19 PM, Harpreet Khanduja w
No objections here.
On Aug 25, 2014, at 12:16 PM, Pei Chen wrote:
> Since we default the runtime java heap sizes to 3g in 3.2.0, should we
> update our documentation to officially only support 64bit? I can only
> see models/pipelines being loaded into mem grow in size. I know it
> may seem t
This is a really exciting. I can’t wait!
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
britt.fi...@wiredinformatics.com
On Sep 22, 2014, at 11:23 AM, Murali Nagendranath wrote:
> +1
>
> On Mon, Sep 22,
Before making changes to the data structure I think it would be good to
understand the use case.
Bruce, can can you give a high level description of the issue you are
trying to solve?
Cheers,
Britt
On Mon, Oct 6, 2014 at 7:38 PM, jay vyas
wrote:
> Im not a ctakes expert by any means, but in
The option Sean mentioned of writing your own custom consumer (without the UIMA
id that is causing your issues) should meet these needs I believe.
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
britt.fi
I think changing the code raises at least some concerns of affecting others,
while adding a custom consumer raises zero. Given how easy it is to write a
custom consumer, that is my vote.
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http
Hi Samir, it looks like you might have the wrong SVN client option specified.
If I recall correctly, in Windows it defaults to ‘JavaHL’ and you want to go
to:
‘Preferences' > ‘Team' > 'SVN' > 'SVN Client’ and select the ‘SVNKit’ option
from the drop down.
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