Ctakes Null Pointer Error for org.apache.ctakes.dependency.parser.util.DependencyUtility

2015-03-27 Thread Pham, Hoang
Hi All, I am trying to add my own dictionary to cTakes. I have added a lucene index for the dictionary, but when the index is added, I would receive a null pointer exception for the org.apache.ctakes.dependency.parser.util.DependencyUtility class. The stack trace is:

Re: Ctakes Null Pointer Error for org.apache.ctakes.dependency.parser.util.DependencyUtility

2015-03-27 Thread Miller, Timothy
Hi Hoang, Can you let me know what version of cTAKES you're using? I looked in that location in trunk and found a null check, so it could be that it's a bug that's been fixed already. In the meantime, if you just want to see if your dictionary is working right, you could disable the

RE: Ctakes Null Pointer Error for org.apache.ctakes.dependency.parser.util.DependencyUtility

2015-03-27 Thread Pham, Hoang
: Miller, Timothy [mailto:timothy.mil...@childrens.harvard.edu] Sent: Fri 3/27/2015 9:38 AM To: dev@ctakes.apache.org Subject: Re: Ctakes Null Pointer Error for org.apache.ctakes.dependency.parser.util.DependencyUtility Hi Hoang, Can you let me know what version of cTAKES you're using? I looked

RE: Ctakes Null Pointer Error for org.apache.ctakes.dependency.parser.util.DependencyUtility

2015-03-27 Thread Pham, Hoang
Message- From: Miller, Timothy [mailto:timothy.mil...@childrens.harvard.edu] Sent: Fri 3/27/2015 9:38 AM To: dev@ctakes.apache.org Subject: Re: Ctakes Null Pointer Error for org.apache.ctakes.dependency.parser.util.DependencyUtility Hi Hoang, Can you let me know what version of cTAKES you're using

Re: Ctakes Null Pointer Error for org.apache.ctakes.dependency.parser.util.DependencyUtility

2015-03-27 Thread Yingcheng Sun
Dear all, Do you know how to generate CUIs by programming, not using GUI. It will be better if you can show me the code. Thank you! Yingcheng On Fri, Mar 27, 2015 at 9:38 AM, Miller, Timothy timothy.mil...@childrens.harvard.edu wrote: Hi Hoang, Can you let me know what version of cTAKES

Re: Ctakes Null Pointer Error for org.apache.ctakes.dependency.parser.util.DependencyUtility

2015-03-27 Thread Michelle Chen
Another way that you can see it is if you look at the ClinicalPipelineFactory.java in the ctakes-clinical-pipeline/ folder. There is a method called getCUIsthat will allow you to get CUIs from the Identified Annotations. Sincerely, Michelle Chen :) Be strong and of good courage; do not be

Re: Ctakes Null Pointer Error for org.apache.ctakes.dependency.parser.util.DependencyUtility

2015-03-27 Thread Maite Meseure Hugues
Dear Yingcheng Sun, You can use BagOfCuisGenerator.java . On Fri, Mar 27, 2015 at 10:48 AM, Yingcheng Sun yxs...@case.edu wrote: Dear all, Do you know how to generate CUIs by programming, not using GUI. It will be better if you can show me the code. Thank you! Yingcheng On Fri, Mar

Re: Ctakes Null Pointer Error for org.apache.ctakes.dependency.parser.util.DependencyUtility

2015-03-27 Thread Pei Chen
@ctakes.apache.org Subject: RE: Ctakes Null Pointer Error for org.apache.ctakes.dependency.parser.util.DependencyUtility To Tomothy, I have cTakes 3.0 install. I looked at the class and there is a null check but for some reason, it is not catching. Also, when I use the indexes that came with cTakes

Re: Ctakes Null Pointer Error for org.apache.ctakes.dependency.parser.util.DependencyUtility

2015-03-27 Thread Miller, Timothy
...@tuftsmedicalcenter.org] Sent: Fri 3/27/2015 1:38 PM To: dev@ctakes.apache.org Subject: RE: Ctakes Null Pointer Error for org.apache.ctakes.dependency.parser.util.DependencyUtility To Tomothy, I have cTakes 3.0 install. I looked at the class and there is a null check but for some reason

RE: Ctakes Null Pointer Error for org.apache.ctakes.dependency.parser.util.DependencyUtility

2015-03-27 Thread Pham, Hoang
...@tuftsmedicalcenter.org] Sent: Fri 3/27/2015 1:38 PM To: dev@ctakes.apache.org Subject: RE: Ctakes Null Pointer Error for org.apache.ctakes.dependency.parser.util.DependencyUtility To Tomothy, I have cTakes 3.0 install. I looked at the class and there is a null check but for some reason, it is not catching