RE: Trying to Understand cTAKES [EXTERNAL]

2018-02-27 Thread Finan, Sean
Hi Don, The default clinical pipeline will provide a little more information: https://cwiki.apache.org/confluence/display/CTAKES/Default+Clinical+Pipeline Sean -Original Message- From: Don Flinn [mailto:fl...@alum.mit.edu] Sent: Tuesday, February 27, 2018 4:16 AM To: dev@ctakes.apache

Re: Trying to Understand cTAKES [EXTERNAL]

2018-02-27 Thread Don Flinn
Hi Sean, I ran the batch file and got the following error, so I have something basically wrong, but don't know what. Any help appreciated - Don My input: bin/runClinicalPipeline -i /tmp/files/CtakesInput --xmiOut /tmp/files/CtakesOutput --user --pass myUsername and password are correct as

RE: Trying to Understand cTAKES [EXTERNAL]

2018-02-27 Thread Finan, Sean
Hi Don, Did you install that dictionary? -Original Message- From: Don Flinn [mailto:fl...@alum.mit.edu] Sent: Tuesday, February 27, 2018 1:43 PM To: dev@ctakes.apache.org Subject: Re: Trying to Understand cTAKES [EXTERNAL] Hi Sean, I ran the batch file and got the following error, so

Re: Trying to Understand cTAKES [EXTERNAL]

2018-02-27 Thread andy mcmurry
Don You may want to see "semantic medline" and semrep from NLM-- in general ctakes is better for physician notes whereas metamap may be better on literature. Extracting predicate relationships-- you can even download a huge database of preprocessed papers On Feb 27, 2018 10:43 AM, "Don Flinn" w