RE: negation/uncertainty: pipeline runs very slowly [EXTERNAL]

2017-06-22 Thread Finan, Sean
have success and maybe I can build on it. Thanks, Sean -Original Message- From: Dligach, Dmitriy [mailto:ddlig...@luc.edu] Sent: Wednesday, June 21, 2017 3:18 PM To: dev@ctakes.apache.org Cc: Miller, Timothy Subject: Re: negation/uncertainty: pipeline runs very slowly [EXTERNAL] Sea

Re: negation/uncertainty: pipeline runs very slowly [EXTERNAL]

2017-06-22 Thread Steven Bethard
On Thu, Jun 22, 2017 at 9:04 AM Finan, Sean < sean.fi...@childrens.harvard.edu> wrote: > There is some suboptimal looping in AssertioncCleartkAnalysisEngine. For > instance: > Collection entities = > JCasUtil.select(identifiedAnnotationView, IdentifiedAnnotation.class); > for (IdentifiedA

RE: negation/uncertainty: pipeline runs very slowly [EXTERNAL]

2017-06-22 Thread Finan, Sean
2:32 PM To: dev@ctakes.apache.org Cc: Miller, Timothy Subject: Re: negation/uncertainty: pipeline runs very slowly [EXTERNAL] On Thu, Jun 22, 2017 at 9:04 AM Finan, Sean < sean.fi...@childrens.harvard.edu> wrote: > There is some suboptimal looping in AssertioncCleartkAnalysisEn

Re: negation/uncertainty: pipeline runs very slowly [EXTERNAL]

2017-06-23 Thread Miller, Timothy
Sean's feedback. Tim From: Dligach, Dmitriy Sent: Wednesday, June 21, 2017 9:18 PM To: dev@ctakes.apache.org Cc: Miller, Timothy Subject: Re: negation/uncertainty: pipeline runs very slowly [EXTERNAL] Sean, thanks for your comments. You are right. The slowdown doesn’t

RE: negation/uncertainty: pipeline runs very slowly [EXTERNAL]

2017-06-26 Thread Mullane, Sean *HS
elp test a solution. Sean -Original Message- From: Miller, Timothy [mailto:timothy.mil...@childrens.harvard.edu] Sent: Friday, June 23, 2017 7:31 AM To: dev@ctakes.apache.org Subject: Re: negation/uncertainty: pipeline runs very slowly [EXTERNAL] Something I just thought of is that if you

RE: negation/uncertainty: pipeline runs very slowly [EXTERNAL]

2017-06-30 Thread Finan, Sean
21, 2017 3:18 PM To: dev@ctakes.apache.org Cc: Miller, Timothy Subject: Re: negation/uncertainty: pipeline runs very slowly [EXTERNAL] Sean, thanks for your comments. You are right. The slowdown doesn’t have anything to do with documentID. I am now convinced that the slowdown has to do with the

Re: negation/uncertainty: pipeline runs very slowly [EXTERNAL]

2017-06-30 Thread Dligach, Dmitriy
o it. > Meanwhile, would you mind submitting a tar on jira? > Thanks, > Sean > > -Original Message- > From: Dligach, Dmitriy [mailto:ddlig...@luc.edu] > Sent: Wednesday, June 21, 2017 3:18 PM > To: dev@ctakes.apache.org > Cc: Miller, Timothy > Subject: Re: neg

Re: negation/uncertainty: pipeline runs very slowly [EXTERNAL]

2017-06-30 Thread Dligach, Dmitriy
t: Wednesday, June 21, 2017 9:18 PM > To: dev@ctakes.apache.org > Cc: Miller, Timothy > Subject: Re: negation/uncertainty: pipeline runs very slowly [EXTERNAL] > > Sean, thanks for your comments. You are right. The slowdown doesn’t have > anything to do with documentID. > &g

RE: negation/uncertainty: pipeline runs very slowly [EXTERNAL]

2017-06-30 Thread Finan, Sean
s that can show off your work. Cheers, Sean -Original Message- From: Dligach, Dmitriy [mailto:ddlig...@luc.edu] Sent: Friday, June 30, 2017 11:03 AM To: dev@ctakes.apache.org Subject: Re: negation/uncertainty: pipeline runs very slowly [EXTERNAL] Hi Tim, Good point, but I happen to be

RE: negation/uncertainty: pipeline runs very slowly [EXTERNAL] [SUSPICIOUS]

2017-06-22 Thread Finan, Sean
r, Timothy Subject: RE: negation/uncertainty: pipeline runs very slowly [EXTERNAL] [SUSPICIOUS] Hi Dima, There is possibly one major cause for things slowing down on large documents: There is some suboptimal looping in AssertioncCleartkAnalysisEngine. For instance: Collectio