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https://issues.apache.org/jira/browse/GIRAPH-1026?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Hassan Eslami resolved GIRAPH-1026.
-----------------------------------
Resolution: Fixed
This issue has been resolved in the new out-of-core design in GIRAPH-1066. The
out-of-core implementation has been significantly re-designed for efficiency,
flexibility, and ease of use. I am closing this issue for now. Please try your
application with the new out-of-core infrastructure, and let me know if there
is any further bug/issue. Thanks in advance.
> New Out-of-core mechanism does not work
> ---------------------------------------
>
> Key: GIRAPH-1026
> URL: https://issues.apache.org/jira/browse/GIRAPH-1026
> Project: Giraph
> Issue Type: Bug
> Affects Versions: 1.2.0-SNAPSHOT
> Reporter: Max Garmash
> Assignee: Hassan Eslami
> Attachments: LPAComputation.txt
>
>
> After releasing new OOC mechanism we tried to test it on our data and it
> failed.
> Our environment:
> 4x (CPU 6 cores / 12 threads, RAM 64GB)
> We can successfully process about 75 millions of vertices.
> With 100-120M vertices it fails like this:
> {noformat}
> 2015-08-04 12:35:21,000 INFO [AMRM Callback Handler Thread]
> yarn.GiraphApplicationMaster
> (GiraphApplicationMaster.java:onContainersCompleted(574)) - Got container
> status for containerID=container_1438068521412_0193_01_000005,
> state=COMPLETE, exitStatus=-104, diagnostics=Container
> [pid=6700,containerID=container_1438068521412_0193_01_000005] is running
> beyond physical memory limits. Current usage: 20.3 GB of 20 GB physical
> memory used; 22.4 GB of 42 GB virtual memory used. Killing container.
> Dump of the process-tree for container_1438068521412_0193_01_000005 :
> |- PID PPID PGRPID SESSID CMD_NAME USER_MODE_TIME(MILLIS)
> SYSTEM_TIME(MILLIS) VMEM_USAGE(BYTES) RSSMEM_USAGE(PAGES) FULL_CMD_LINE
> |- 6704 6700 6700 6700 (java) 78760 20733 24033841152 5317812 java
> -Xmx20480M -Xms20480M -cp
> .:${CLASSPATH}:./*:$HADOOP_CLIENT_CONF_DIR:$HADOOP_CONF_DIR:$HADOOP_COMMON_HOME/*:$HADOOP_COMMON_HOME/lib/*:$HADOOP_HDFS_HOME/*:$HADOOP_HDFS_HOME/lib/*:$HADOOP_YARN_HOME/*:$HADOOP_YARN_HOME/lib/*:$HADOOP_MAPRED_HOME/*:$HADOOP_MAPRED_HOME/lib/*:$MR2_CLASSPATH:./*:/etc/hadoop/conf.cloudera.yarn:/run/cloudera-scm-agent/process/264-yarn-NODEMANAGER:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-hdfs/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-hdfs/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-yarn/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-yarn/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-mapreduce/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-mapreduce/lib/*::./*:/etc/hadoop/conf.cloudera.yarn:/run/cloudera-scm-agent/process/264-yarn-NODEMANAGER:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-hdfs/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-hdfs/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-yarn/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-yarn/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-mapreduce/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-mapreduce/lib/*::./*:/etc/hadoop/conf.cloudera.yarn:/run/cloudera-scm-agent/process/264-yarn-NODEMANAGER:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-hdfs/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-hdfs/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-yarn/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-yarn/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-mapreduce/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-mapreduce/lib/*:
> org.apache.giraph.yarn.GiraphYarnTask 1438068521412 193 5 1
> |- 6700 6698 6700 6700 (bash) 0 0 14376960 433 /bin/bash -c java
> -Xmx20480M -Xms20480M -cp
> .:${CLASSPATH}:./*:$HADOOP_CLIENT_CONF_DIR:$HADOOP_CONF_DIR:$HADOOP_COMMON_HOME/*:$HADOOP_COMMON_HOME/lib/*:$HADOOP_HDFS_HOME/*:$HADOOP_HDFS_HOME/lib/*:$HADOOP_YARN_HOME/*:$HADOOP_YARN_HOME/lib/*:$HADOOP_MAPRED_HOME/*:$HADOOP_MAPRED_HOME/lib/*:$MR2_CLASSPATH:./*:/etc/hadoop/conf.cloudera.yarn:/run/cloudera-scm-agent/process/264-yarn-NODEMANAGER:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-hdfs/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-hdfs/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-yarn/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-yarn/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-mapreduce/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-mapreduce/lib/*:
> org.apache.giraph.yarn.GiraphYarnTask 1438068521412 193 5 1
> 1>/var/log/hadoop-yarn/container/application_1438068521412_0193/container_1438068521412_0193_01_000005/task-5-stdout.log
>
> 2>/var/log/hadoop-yarn/container/application_1438068521412_0193/container_1438068521412_0193_01_000005/task-5-stderr.log
>
> Container killed on request. Exit code is 143
> Container exited with a non-zero exit code 143
> {noformat}
> Logs from container
> {noformat}
> 2015-08-04 12:34:51,258 INFO [netty-server-worker-4] handler.RequestDecoder
> (RequestDecoder.java:channelRead(74)) - decode: Server window metrics
> MBytes/sec received = 12.5315, MBytesReceived = 380.217, ave received req
> MBytes = 0.007, secs waited = 30.34
> 2015-08-04 12:35:16,258 INFO [check-memory] ooc.CheckMemoryCallable
> (CheckMemoryCallable.java:call(221)) - call: Memory is very limited now.
> Calling GC manually. freeMemory = 924.27MB
> {noformat}
> We are running our job like this:
> {noformat}
> hadoop jar
> giraph-examples-1.2.0-SNAPSHOT-for-hadoop-2.6.0-cdh5.4.4-jar-with-dependencies.jar
> \
> org.apache.giraph.GiraphRunner \
> -Dgiraph.yarn.task.heap.mb=20480 \
> -Dgiraph.isStaticGraph=true \
> -Dgiraph.useOutOfCoreGraph=true \
> -Dgiraph.logLevel=info \
> -Dgiraph.weightedPageRank.superstepCount=5 \
> ru.isys.WeightedPageRankComputation \
> -vif ru.isys.CrawlerInputFormat \
> -vip /tmp/bigdata/input \
> -vof org.apache.giraph.io.formats.IdWithValueTextOutputFormat \
> -op /tmp/giraph \
> -w 6 \
> -yj
> giraph-examples-1.2.0-SNAPSHOT-for-hadoop-2.6.0-cdh5.4.4-jar-with-dependencies.jar
> {noformat}
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