okumin created HIVE-26184:
-----------------------------

             Summary: COLLECT_SET with GROUP BY is very slow when some keys are 
highly skewed
                 Key: HIVE-26184
                 URL: https://issues.apache.org/jira/browse/HIVE-26184
             Project: Hive
          Issue Type: Bug
          Components: Hive
    Affects Versions: 3.1.3, 2.3.8
            Reporter: okumin
            Assignee: okumin


I observed some reducers spend 98% of CPU time in invoking 
`java.util.HashMap#clear`.

Looking the detail, I found COLLECT_SET reuses a LinkedHashSet and its `clear` 
can be quite heavy when a relation has a small number of highly skewed keys.

 

To reproduce the issue, first, we will create rows with a skewed key.
{code:java}
INSERT INTO test_collect_set
SELECT '00000000-0000-0000-0000-000000000000' AS key, CAST(UUID() AS VARCHAR) 
AS value
FROM table_with_many_rows
LIMIT 100000;{code}
Then, we will create many non-skewed rows.
{code:java}
INSERT INTO test_collect_set
SELECT UUID() AS key, UUID() AS value
FROM sample_datasets.nasdaq
LIMIT 5000000;{code}
We can observe the issue when we aggregate values by `key`.
{code:java}
SELECT key, COLLECT_SET(value) FROM group_by_skew GROUP BY key{code}



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