RKuttruff commented on code in PR #185:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/185#discussion_r984136730
##
docs/quickstart.rst:
##
@@ -18,43 +18,59 @@ This quickstart guide will walk you through how to install
and run NEXUS on your
Prerequisites
RKuttruff commented on code in PR #185:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/185#discussion_r984136329
##
CHANGELOG.md:
##
@@ -41,9 +41,9 @@ and this project adheres to [Semantic
Versioning](https://semver.org/spec/v2.0.0
- Fixed issue where satellite to
RKuttruff commented on code in PR #185:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/185#discussion_r984136094
##
docker/jupyter/Dockerfile:
##
@@ -29,7 +29,8 @@ ENV CHOWN_HOME_OPTS='-R'
ENV REBUILD_CODE=true
ARG
RKuttruff commented on PR #202:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/202#issuecomment-1262998052
I actually don't know exactly how many matches L2 -> Saildrone _should_ be
returning. I based the current test case on how many were returning from the
AWS deployment.
skorper commented on code in PR #185:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/185#discussion_r984133710
##
docker/jupyter/requirements.txt:
##
@@ -1,4 +1,3 @@
-shapely
-requests
-numpy
-cassandra-driver==3.9.0
Review Comment:
I'm curious why we were able
skorper commented on code in PR #185:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/185#discussion_r984133683
##
docs/quickstart.rst:
##
@@ -18,43 +18,59 @@ This quickstart guide will walk you through how to install
and run NEXUS on your
Prerequisites
skorper commented on PR #202:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/202#issuecomment-1262983746
Note, L2 -> Saildrone is returning more matches than expected for both my
changes and the version deployed to AWS (Riley correct me if I'm wrong) so this
discrepancy is maybe
kevinmarlis opened a new pull request, #203:
URL: https://github.com/apache/incubator-sdap-nexus/pull/203
On the AQ deployment we found a redirect bug that caused the AQ
`/nexus/list` to crash when attempting to connect to a remote SDAP. The
redirect code was catching
RKuttruff commented on PR #202:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/202#issuecomment-1261347211
As a followup: All the (currently implemented) test cases are passing with
the exception of L2 -> Saildrone (returning more matches than expected)
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RKuttruff commented on PR #202:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/202#issuecomment-1261314820
Testing to see if this affects my regression tests. It seems that the same
query is returning different numbers of matches.
The query I'm using:
skorper opened a new pull request, #202:
URL: https://github.com/apache/incubator-sdap-nexus/pull/202
[SDAP-402](https://issues.apache.org/jira/browse/SDAP-402)
- Fixed matchOnce logic. Previously, only a single secondary point was
matched to a primary point. Now, we are allowing
RKuttruff opened a new pull request, #201:
URL: https://github.com/apache/incubator-sdap-nexus/pull/201
Potential fix for duplicate request issue
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dependabot[bot] opened a new pull request, #10:
URL: https://github.com/apache/incubator-sdap-nexusproto/pull/10
Bumps [protobuf](https://github.com/protocolbuffers/protobuf) from 3.2.0 to
3.18.3.
Release notes
Sourced from
dependabot[bot] closed pull request #9: Bump protobuf from 3.2.0 to 3.15.0 in
/src/main/python/nexusproto
URL: https://github.com/apache/incubator-sdap-nexusproto/pull/9
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dependabot[bot] commented on PR #9:
URL:
https://github.com/apache/incubator-sdap-nexusproto/pull/9#issuecomment-1256645505
Superseded by #10.
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skorper merged PR #198:
URL: https://github.com/apache/incubator-sdap-nexus/pull/198
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RKuttruff commented on PR #200:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/200#issuecomment-1251679363
Added implementation for `/domsresults` endpoint.
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RKuttruff opened a new pull request, #200:
URL: https://github.com/apache/incubator-sdap-nexus/pull/200
Added output formatter for COVERAGE plotting to be used by the
`/match_spark` endpoint.
Outputs support the following plots:
- Time series (primary + secondary)
- Scatter
dependabot[bot] opened a new pull request, #199:
URL: https://github.com/apache/incubator-sdap-nexus/pull/199
Bumps [mako](https://github.com/sqlalchemy/mako) from 1.0.7 to 1.2.2.
Release notes
Sourced from https://github.com/sqlalchemy/mako/releases;>mako's releases.
1.2.2
briansaildrone commented on PR #9:
URL:
https://github.com/apache/incubator-sdap-in-situ-data-services/pull/9#issuecomment-1240931286
I've also added further clarification for enabling EKS IRSA
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briansaildrone opened a new pull request, #9:
URL: https://github.com/apache/incubator-sdap-in-situ-data-services/pull/9
Accidentally copied/pasted the existing credential-based s3 auth provider
into the EKS IRSA documentation. This PR fixes that by adding the correct auth
provider.
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skorper merged PR #197:
URL: https://github.com/apache/incubator-sdap-nexus/pull/197
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skorper commented on PR #197:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/197#issuecomment-1235907553
Added provider info to openapi spec:
![Screen Shot 2022-09-02 at 2 20 49
skorper opened a new pull request, #197:
URL: https://github.com/apache/incubator-sdap-nexus/pull/197
* Fixed bug introduced in the last PR where `domsresults` no longer worked.
This was because the `details` field name were updated, but the code that
inserts results into the database was
ngachung merged PR #196:
URL: https://github.com/apache/incubator-sdap-nexus/pull/196
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skorper opened a new pull request, #196:
URL: https://github.com/apache/incubator-sdap-nexus/pull/196
Prior to this branch, I have been cherry-picking out the SDAP Proxy changes,
as they were breaking things in matchup.
This PR addresses those changes, as well as implements feedback
MrFok opened a new pull request, #60:
URL: https://github.com/apache/incubator-sdap-ingester/pull/60
- Generated separate files for Zarr implementation (without disturbing
existing pipeline)
- Local test generated for Lazy Load Zarr Aggregation (LLZA)
- Minor dependency changes, bug
RKuttruff commented on PR #185:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/185#issuecomment-1214321592
TODO: Check if AVHRR migration to Earthdata Cloud will affect granule
download step.
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RKuttruff commented on PR #185:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/185#issuecomment-1212779246
Jupyter image verified to be working.
Now awaiting validation & runtime observations from others.
PR will be ready when this happens.
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RKuttruff commented on PR #185:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/185#issuecomment-1212307051
I instead plan to have the k8s deployment in another PR. Once I get this one
sorted & validated, I will make it ready for review.
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RKuttruff commented on PR #185:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/185#issuecomment-1211551329
```
---
TypeError Traceback (most recent call last)
Input In
dependabot[bot] commented on PR #190:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/190#issuecomment-1211342374
OK, I won't notify you again about this release, but will get in touch when
a new version is available. If you'd rather skip all updates until the next
major or minor
dependabot[bot] commented on PR #192:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/192#issuecomment-1211342387
OK, I won't notify you again about this release, but will get in touch when
a new version is available. If you'd rather skip all updates until the next
major or minor
dependabot[bot] commented on PR #191:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/191#issuecomment-1211342379
OK, I won't notify you again about this release, but will get in touch when
a new version is available. If you'd rather skip all updates until the next
major or minor
dependabot[bot] commented on PR #193:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/193#issuecomment-1211342395
OK, I won't notify you again about this release, but will get in touch when
a new version is available. If you'd rather skip all updates until the next
major or minor
ngachung closed pull request #193: Bump protobuf from 3.14.0 to 3.15.0 in
/tools/cdms
URL: https://github.com/apache/incubator-sdap-nexus/pull/193
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ngachung closed pull request #191: Bump pillow from 8.1.2 to 9.0.1 in
/tools/cdms
URL: https://github.com/apache/incubator-sdap-nexus/pull/191
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ngachung closed pull request #190: Bump lxml from 4.6.5 to 4.9.1 in /tools/cdms
URL: https://github.com/apache/incubator-sdap-nexus/pull/190
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ngachung closed pull request #189: Bump mistune from 0.8.4 to 2.0.3 in
/tools/cdms
URL: https://github.com/apache/incubator-sdap-nexus/pull/189
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ngachung closed pull request #192: Bump numpy from 1.20.1 to 1.22.0 in
/tools/cdms
URL: https://github.com/apache/incubator-sdap-nexus/pull/192
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dependabot[bot] commented on PR #189:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/189#issuecomment-1211342368
OK, I won't notify you again about this release, but will get in touch when
a new version is available. If you'd rather skip all updates until the next
major or minor
ngachung closed pull request #188: Bump notebook from 6.4.11 to 6.4.12 in
/tools/cdms
URL: https://github.com/apache/incubator-sdap-nexus/pull/188
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ngachung merged PR #194:
URL: https://github.com/apache/incubator-sdap-nexus/pull/194
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dependabot[bot] opened a new pull request, #8:
URL: https://github.com/apache/incubator-sdap-in-situ-data-services/pull/8
Bumps [pyspark](https://github.com/apache/spark) from 3.1.2 to 3.1.3.
Commits
skorper merged PR #195:
URL: https://github.com/apache/incubator-sdap-nexus/pull/195
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RKuttruff opened a new pull request, #195:
URL: https://github.com/apache/incubator-sdap-nexus/pull/195
Minor formatting error + entry moved to correct section.
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ngachung merged PR #183:
URL: https://github.com/apache/incubator-sdap-nexus/pull/183
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ngachung opened a new pull request, #194:
URL: https://github.com/apache/incubator-sdap-nexus/pull/194
GitHub dependabot is flagging a lot of the specific dependencies. To run the
tool we really only need netCDF4 library.
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dependabot[bot] opened a new pull request, #193:
URL: https://github.com/apache/incubator-sdap-nexus/pull/193
Bumps [protobuf](https://github.com/protocolbuffers/protobuf) from 3.14.0 to
3.15.0.
Release notes
Sourced from
dependabot[bot] opened a new pull request, #192:
URL: https://github.com/apache/incubator-sdap-nexus/pull/192
Bumps [numpy](https://github.com/numpy/numpy) from 1.20.1 to 1.22.0.
Release notes
Sourced from https://github.com/numpy/numpy/releases;>numpy's releases.
v1.22.0
dependabot[bot] opened a new pull request, #190:
URL: https://github.com/apache/incubator-sdap-nexus/pull/190
Bumps [lxml](https://github.com/lxml/lxml) from 4.6.5 to 4.9.1.
Changelog
Sourced from https://github.com/lxml/lxml/blob/master/CHANGES.txt;>lxml's
changelog.
4.9.1
dependabot[bot] opened a new pull request, #188:
URL: https://github.com/apache/incubator-sdap-nexus/pull/188
Bumps [notebook](http://jupyter.org) from 6.4.11 to 6.4.12.
[![Dependabot compatibility
dependabot[bot] opened a new pull request, #191:
URL: https://github.com/apache/incubator-sdap-nexus/pull/191
Bumps [pillow](https://github.com/python-pillow/Pillow) from 8.1.2 to 9.0.1.
Release notes
Sourced from https://github.com/python-pillow/Pillow/releases;>pillow's
dependabot[bot] opened a new pull request, #189:
URL: https://github.com/apache/incubator-sdap-nexus/pull/189
Bumps [mistune](https://github.com/lepture/mistune) from 0.8.4 to 2.0.3.
Release notes
Sourced from https://github.com/lepture/mistune/releases;>mistune's
releases.
ngachung merged PR #178:
URL: https://github.com/apache/incubator-sdap-nexus/pull/178
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ngachung merged PR #186:
URL: https://github.com/apache/incubator-sdap-nexus/pull/186
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RKuttruff commented on PR #185:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/185#issuecomment-1205848293
Currently investigating deployment with kubernetes. Will write second guide
for that and add to this PR
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tloubrieu-jpl opened a new pull request, #187:
URL: https://github.com/apache/incubator-sdap-nexus/pull/187
This pull request adds a small script to generate a piece of
collection-config configmap to present remote SDAP collections in the local
SDAP server.
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RKuttruff commented on PR #185:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/185#issuecomment-1205649728
Currently uses an older version of the nexus webapp image. Changes made to
sdap after this image was made causes the `/timeSeriesSpark` endpoint to fail
(This endpoint is
RKuttruff opened a new pull request, #186:
URL: https://github.com/apache/incubator-sdap-nexus/pull/186
It appeared to have been caused by an import issue in RedirectHandler.py
Updated import statements and tested with local SDAP. Verified results
against SDAP image preceding the
RKuttruff opened a new pull request, #185:
URL: https://github.com/apache/incubator-sdap-nexus/pull/185
Updated quickstart guide for standalone SDAP deployment with Docker.
Draft PR since this guide still needs to be verified and tested.
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ngachung merged PR #165:
URL: https://github.com/apache/incubator-sdap-nexus/pull/165
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ngachung commented on code in PR #178:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/178#discussion_r935888956
##
tools/cdms/cdms_reader.py:
##
@@ -0,0 +1,250 @@
+# Licensed to the Apache Software Foundation (ASF) under one or more
+# contributor license agreements.
ngachung commented on PR #166:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/166#issuecomment-1202991601
This PR has been superseded by
https://github.com/apache/incubator-sdap-nexus/pull/178
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ngachung closed pull request #166: CDMS - 150 NETCDF Reader Updates
URL: https://github.com/apache/incubator-sdap-nexus/pull/166
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ngachung merged PR #181:
URL: https://github.com/apache/incubator-sdap-nexus/pull/181
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ngachung merged PR #182:
URL: https://github.com/apache/incubator-sdap-nexus/pull/182
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dependabot[bot] opened a new pull request, #184:
URL: https://github.com/apache/incubator-sdap-nexus/pull/184
Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.2 to 1.26.5.
Release notes
Sourced from https://github.com/urllib3/urllib3/releases;>urllib3's
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ngachung merged PR #173:
URL: https://github.com/apache/incubator-sdap-nexus/pull/173
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tloubrieu-jpl commented on PR #173:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/173#issuecomment-1194753764
Hello @nga, @skorper,
Can you review this pull request ? I am afraid it gets buried under the
other pull requests which came after.
I need the pull request to
RKuttruff opened a new pull request, #183:
URL: https://github.com/apache/incubator-sdap-nexus/pull/183
Regression test script that tests a number of SDAP endpoints + the insitu
endpoint. SDAP host and insitu endpoint can be configured through environment
variables. Tests can also be
RKuttruff opened a new pull request, #182:
URL: https://github.com/apache/incubator-sdap-nexus/pull/182
Latitude and longitude were switched.
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RKuttruff opened a new pull request, #181:
URL: https://github.com/apache/incubator-sdap-nexus/pull/181
Matchup makes repeated calls to `query_insitu_schema()` in the insitu
module, which results in a severe performance penalty due to repeatedly hitting
the insitu API for the same data.
ngachung merged PR #179:
URL: https://github.com/apache/incubator-sdap-nexus/pull/179
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ngachung merged PR #175:
URL: https://github.com/apache/incubator-sdap-nexus/pull/175
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ngachung merged PR #180:
URL: https://github.com/apache/incubator-sdap-nexus/pull/180
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ngachung merged PR #176:
URL: https://github.com/apache/incubator-sdap-nexus/pull/176
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ngachung commented on PR #179:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/179#issuecomment-1190587866
Thank you! That's expected as I filtered out only matches that contained
mass_concentration_of_chlorophyll_in_sea_water.
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skorper commented on PR #179:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/179#issuecomment-1190504757
@ngachung Ran this same request locally using this branch -- it seemed to
match to more than 6 points. See output below.
I ran this through a script I wrote to verify
skorper commented on PR #180:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/180#issuecomment-1190486320
Latest update:
- Query insitu schema endpoint to get units for insitu observations
- Use "meta" field to populate "id" field for insitu
- Moved depth to top level
skorper commented on PR #180:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/180#issuecomment-1190433207
Thanks for your review @ngachung.
- I wondered that as well. The depth field should probably be at the root
level alongside lat/lon/time.
- Thank you!
- Thanks!
ngachung commented on PR #180:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/180#issuecomment-1190348199
Thank you, @skorper.
- We can discuss at our next team meeting, but I wonder if depth should just
be added as an attribute similar to lat, lon for both primary and
ngachung commented on PR #179:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/179#issuecomment-1190328943
Thank you, @skorper. This is a call we used for the notebook demo that
returned 6 matches.
skorper opened a new pull request, #180:
URL: https://github.com/apache/incubator-sdap-nexus/pull/180
https://issues.apache.org/jira/browse/SDAP-397
- Added depth to matchup insitu output
- Added in the "data" field (see example below). Is this a desirable
location for this
skorper opened a new pull request, #179:
URL: https://github.com/apache/incubator-sdap-nexus/pull/179
https://issues.apache.org/jira/browse/SDAP-396
Added saildrone insitu API.
I haven't had much luck finding a request that results in a matchup. I'm
trying to find overlap with
JordanGethers opened a new pull request, #178:
URL: https://github.com/apache/incubator-sdap-nexus/pull/178
cdms_reader.py is the original doms_reader.py code with additional
functionality provided for the user to make each run of the program more
customizable. The user may now select,
RKuttruff opened a new pull request, #177:
URL: https://github.com/apache/incubator-sdap-nexus/pull/177
Count equalling insitu datasets + satellite datasets
Confirmed working with quick test on local SDAP instance
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skorper opened a new pull request, #176:
URL: https://github.com/apache/incubator-sdap-nexus/pull/176
- Nga was seeing a 500 error when doing satellite to satellite matchup
- Fixed satellite to satellite matchup failure -- was due to ` 'platform':
None,` line
- Nga's request was
tloubrieu-jpl commented on code in PR #174:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/174#discussion_r921396416
##
analysis/webservice/algorithms_spark/Matchup.py:
##
@@ -218,12 +218,17 @@ def calc(self, request, **args):
self.log.debug("Querying for
ngachung commented on PR #175:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/175#issuecomment-1183782964
Lgtm. Update CHANGELOG.md please?
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skorper opened a new pull request, #175:
URL: https://github.com/apache/incubator-sdap-nexus/pull/175
CSV and NetCDF requests were failing for AWS Insitu endpoints because there
is no entry for those datasets in the `METADATA_LINKS` dict. Updated the code
so that is optional.
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ngachung merged PR #7:
URL: https://github.com/apache/incubator-sdap-in-situ-data-services/pull/7
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RKuttruff opened a new pull request, #174:
URL: https://github.com/apache/incubator-sdap-nexus/pull/174
Implementation of a proxy to fetch Nexus data stored in an AWS S3 bucket as
a Zarr array.
Currently only supports the MUR25-JPL-L4-GLOB-v04.2 dataset and gridded data
and is only
ngachung commented on PR #166:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/166#issuecomment-1181956713
Sorry for the confusion @JordanGethers. Yes, the github repository is
public, but the CDMS JIRA is restricted. Please push all your changes to your
forked repo, but where
tloubrieu-jpl opened a new pull request, #173:
URL: https://github.com/apache/incubator-sdap-nexus/pull/173
This pull request completes ticket
https://issues.apache.org/jira/browse/SDAP-388 by providing metadata of the
remote collections in the /list end-point.
The remote metadata
JordanGethers commented on PR #166:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/166#issuecomment-1181826386
Hello Nga,
I made the adjustments you mentioned for SDAP-390, but I don't exactly
understand where to put the code since you say that JIRA is private and not
ngachung commented on PR #166:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/166#issuecomment-1179182763
Thank you, @JordanGethers!
Please reference
https://issues.apache.org/jira/projects/SDAP/issues/SDAP-390 as CDMS Jira is
restricted and not public.
Please also
ngachung merged PR #172:
URL: https://github.com/apache/incubator-sdap-nexus/pull/172
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skorper opened a new pull request, #172:
URL: https://github.com/apache/incubator-sdap-nexus/pull/172
https://issues.apache.org/jira/browse/SDAP-371
### Summary of changes
- Renamed endpoint `/domssubset` -> `/cdmssubset`
- Updated openapi spec with "cdms" terminology
skorper merged PR #171:
URL: https://github.com/apache/incubator-sdap-nexus/pull/171
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