Re: Docker Activity Plugin Enhancements

2016-08-09 Thread Nadeesh Dilanga
Hi Alan, Hi Stian, I send a pull request with the Health Check feature for Docker Activity Plugin. Please review and let me know if I need to change anything. On Tue, Aug 9, 2016 at 9:18 PM, Nadeesh Dilanga wrote: > I have updated the JIRA [1] with the user guide which has screen captures > on u

[GitHub] incubator-taverna-common-activities pull request #19: Docker activity health...

2016-08-09 Thread NadeeshDilanga
GitHub user NadeeshDilanga opened a pull request: https://github.com/apache/incubator-taverna-common-activities/pull/19 Docker activity health check This has the health checker implementation for docker activity plugin. You can merge this pull request into a Git repository by runnin

Re: Docker Activity Plugin Enhancements

2016-08-09 Thread Nadeesh Dilanga
I have updated the JIRA [1] with the user guide which has screen captures on understanding docker activity plugin. Please let me know your thoughts, so that I can improve it and update it. [1] - https://issues.apache.org/jira/browse/TAVERNA-901 On Mon, Aug 8, 2016 at 10:39 PM, Nadeesh Dilanga wr

[jira] [Updated] (TAVERNA-901) Run Docker from Taverna

2016-08-09 Thread Hewa Vidana Gamage Nadeesh Dilanga (JIRA)
[ https://issues.apache.org/jira/browse/TAVERNA-901?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Hewa Vidana Gamage Nadeesh Dilanga updated TAVERNA-901: --- Attachment: Docker Activity Plugin UnitTest User Guide

Re: Build failed in Jenkins: incubator-taverna-commandline-nightly #209

2016-08-09 Thread Andy Seaborne
I've reported this to builds@ - Jena is affected to though less so. The workaround is not to use H1-H10 servers. Andy On 09/08/16 18:29, Apache Jenkins Server wrote: See -- S

Re: Taverna Player integration ( Apache Taverna Mobile )

2016-08-09 Thread GaleN
I'm glad I didn't miss anything as obvious as a run button! I think the navigation drawer is very much current and consistent with Google's material design principles. Personally, I like it. It's used in lots of Google apps (Inbox, Gmail, Photos). Here's a link to the navigation part of material d

Re: Taverna Player integration ( Apache Taverna Mobile )

2016-08-09 Thread Ian Dunlop
Hello The run workflow button was removed during the current redesign but I think sagar is planning on adding it back in soon. The tab swipe is no longer available. You can access them via the navigation drawer. The jury is out on this one. I kind of like the swipe. I wonder what current android f

Re: Taverna Player integration ( Apache Taverna Mobile )

2016-08-09 Thread GaleN
Hi, I'm using Android Studio 2.1.2 and am running the app on a Nexus 5x API 22 emulator. Just scrolling through the Workflows list page seemed fine for me, but opening the navigation drawer was very slow and jerky. I don't see the two swipeable tabs mentioned in the README file (workflow stream

Re: Towards graduation?

2016-08-09 Thread GaleN
Apologies @Ian, I have added you to the permissions. Gale On Tue, Aug 9, 2016 at 9:37 AM GaleN wrote: > Apologies > > On Tue, Aug 9, 2016 at 8:54 AM Ian Dunlop wrote: > >> Hello, >> >> @Gale & others. Maybe I'm missing something but I can't see a button/link >> to edit the graduation checklis

Re: Towards graduation?

2016-08-09 Thread GaleN
Apologies On Tue, Aug 9, 2016 at 8:54 AM Ian Dunlop wrote: > Hello, > > @Gale & others. Maybe I'm missing something but I can't see a button/link > to edit the graduation checklist page. Do I need to be added to the > permissions? Account is probably ianwdunlop. > > Cheers, > > Ian > > On 8 Aug

Re: CWL code questions

2016-08-09 Thread GaleN
Got it, Michael! Thanks, I misread the user guide. And thanks for the detailed link! On Tue, Aug 9, 2016 at 9:32 AM GaleN wrote: > Thanks for explaining the process you use, Ian. > > This is from GitHub help, but doesn't seem any easier than the way you > described: > https://help.github.com/art

Re: CWL code questions

2016-08-09 Thread GaleN
Thanks for explaining the process you use, Ian. This is from GitHub help, but doesn't seem any easier than the way you described: https://help.github.com/articles/commenting-on-differences-between-files/. On Tue, Aug 9, 2016 at 9:29 AM Michael Crusoe wrote: > Happy to clarify. The detailed (and

Re: CWL code questions

2016-08-09 Thread Michael Crusoe
Happy to clarify. The detailed (and rather hard to read, we apologize) full specification is at http://www.commonwl.org/v1.0/CommandLineTool.html In this instance the user guide is (correctly) referring to the construction of the command line. I was referring to the order of the fields within a CW

Re: CWL code questions

2016-08-09 Thread GaleN
Hi Michael, thank you for the clarification! I was only going by "A Gentle Introduction to the Common Workflow Language" (see link below). I'm (obviously) new to CWL and don't yet know which resources are most accurate, so thanks for jumping in to correct me! Thilina, What I meant was that the ver

Re: CWL code questions

2016-08-09 Thread GaleN
Yes, I was looking at the older branch. I'll put future suggestions on GitHub. On Fri, Aug 5, 2016, 10:10 PM Thilina Manamgoda wrote: > Hi, > > Yes it should. What you meant by "Also, I notice in this CWL User Guide ( > http://www.commonwl.org/draft-3/UserGuide.html ) it says the basecommand >

Re: CWL code questions

2016-08-09 Thread Michael Crusoe
There is no required order for `baseCommand`, `inputs`, `class`, `cwlVersion`, and so forth. They are allowed to be in any order. On Sat, Aug 6, 2016 at 8:10 AM, Thilina Manamgoda wrote: > Hi, > > Yes it should. What you meant by "Also, I notice in this CWL User Guide ( > http://www.commonwl.or

Re: Towards graduation?

2016-08-09 Thread Ian Dunlop
Hello, @Gale & others. Maybe I'm missing something but I can't see a button/link to edit the graduation checklist page. Do I need to be added to the permissions? Account is probably ianwdunlop. Cheers, Ian On 8 August 2016 at 20:31, Andy Seaborne wrote: > What do others on the PPMC think? >

Re: CWL code questions

2016-08-09 Thread Ian Dunlop
Hello, As a slight aside, I've never quite figured out how to comment on the actual code in a default branch in github. I can only comment on an actual revision using the 'history' button for a file, then clicking on the link for a particular revision and then clicking on the blue plus icon that a

Re: Taverna Player integration ( Apache Taverna Mobile )

2016-08-09 Thread Ian Dunlop
Hello, There used to be a taverna player portal instance running on the heater machine at manchester uni (you will notice it in the app defaults) but it no longer seems to be available. The taverna player portal code is available at https://github.com/myGrid/taverna-player-portal but it also needs

[GitHub] incubator-taverna-mobile pull request #25: Redesign Login layout and working...

2016-08-09 Thread asfgit
Github user asfgit closed the pull request at: https://github.com/apache/incubator-taverna-mobile/pull/25 --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if th