Re: [OMPI devel] [EXTERNAL] Re: Developers Meeting

2012-04-06 Thread Barrett, Brian W
Agreed. Brian On Apr 6, 2012, at 7:31 PM, Ralph Castain wrote: > +1 for SJ - much easier to be someplace with a major airport. > > > On Apr 5, 2012, at 7:54 AM, Gutierrez, Samuel K wrote: > >> My vote is for San Jose. >> >> Sam >> >> >> From: devel-b

Re: [OMPI devel] [EXTERNAL] Re: Developers Meeting

2012-04-06 Thread Ralph Castain
+1 for SJ - much easier to be someplace with a major airport. On Apr 5, 2012, at 7:54 AM, Gutierrez, Samuel K wrote: > My vote is for San Jose. > > Sam > > > From: devel-boun...@open-mpi.org [devel-boun...@open-mpi.org] on behalf of > Josh Hursey [jjhu

Re: [OMPI devel] OpenMPI and R

2012-04-06 Thread Benedict Holland
Oh this actually does make a lot of sense. The kicker is that Rmpi doesn't like to use OMPI and really loves to use LAM so I have to use R in batch mode by running mpirun -np 12 and specify the host file. I have a bad feeling that this is loading the library 12 times, once for each R namespace. Whi

Re: [OMPI devel] OpenMPI and R

2012-04-06 Thread Jeffrey Squyres
On Apr 5, 2012, at 9:07 PM, Benedict Holland wrote: > Oh how interesting and I hope this helps someone. Following another link, I > had to use: > > ./configure --prefix /usr --enable-shared --enable-static This makes sense. You were falling victim to the fact that R dlopens libmpi as a dynami

Re: [OMPI devel] [patch] Bugs in mpi-f90-interfaces.h and its bridge implementation

2012-04-06 Thread Jeffrey Squyres
On Apr 6, 2012, at 7:09 AM, Kawashima wrote: > I've checked your code in bitbucket. Two types of error are found. > I've attached the patch. > > First one (ignore-tkr) seems to be an error by manual patching. > Second one (tkr) seems that patch command could not apply my fixes > because neighbori

Re: [OMPI devel] [patch] Bugs in mpi-f90-interfaces.h and its bridge implementation

2012-04-06 Thread Kawashima
Hi Jeff, I've checked your code in bitbucket. Two types of error are found. I've attached the patch. First one (ignore-tkr) seems to be an error by manual patching. Second one (tkr) seems that patch command could not apply my fixes because neighboring lines were modified in your code. Regards,

Re: [OMPI devel] OpenMPI and R

2012-04-06 Thread TERRY DONTJE
Have you tried to compile and run a simple MPI program with your installed Open MPI? If that works then you need to figure out what is being done by the Makefile when it is "testing if installed package can be loaded" and try and reproduce the issue manually. BTW, I normally configure my OMPI