Re: [OMPI devel] Error compiling

2012-12-23 Thread RC
I had originally installed v1.6.3 in /usr/local but had problems with it hanging on some commands. The installation of the development version in the same directory probably is the reason for the errors I am getting. I will do a clean install in a different directory. Thanks for your help. On D

Re: [OMPI devel] Error compiling

2012-12-23 Thread Ralph Castain
Wow - strange. How was this configured? Something clearly is messed up as there is no such thing as a "basic" grpcomm module, or an ess "slurmd" module, etc. any more. My best guess is that you wound up installing this on top of an existing OMPI install, and have now created a massive library c

Re: [OMPI devel] Error compiling

2012-12-23 Thread R C
I put /usr/local/lib at the beginning of LD_LIBRARY_PATH and I get: $ ompi_info [RCAsus1:20105] mca: base: component_find: unable to open /usr/local/lib/openmpi/mca_errmgr_default: /usr/local/lib/openmpi/mca_errmgr_default.so: undefined symbol: orte_errmgr_base_output (ignored) [RCAsus1:20105] mca:

Re: [OMPI devel] Error compiling

2012-12-23 Thread Ralph Castain
Do you have your LD_LIBRARY_PATH set correctly? You want your prefix location to be at the front so you don't pickup something from the default system installation. On Dec 23, 2012, at 12:39 PM, R C wrote: > Thanks, r27719 compiles but I get an error when I try: > $/usr/local/bin/ompi_info >

Re: [OMPI devel] Error compiling

2012-12-23 Thread R C
Thanks, r27719 compiles but I get an error when I try: $/usr/local/bin/ompi_info /usr/local/bin/ompi_info: symbol lookup error: /usr/local/bin/ompi_info: undefined symbol: mca_fbtl_base_components_opened and when I tried to compile a test program: $ mpicc -o hw hello.c mpicc: Symbol `opal_show_hel

Re: [OMPI devel] Error compiling

2012-12-23 Thread Ralph Castain
Sigh - sorry about that. Guess we'll have to feel our way down the various tools. I've committed a fix that -should- resolve this for the rest of the tools in the OMPI layer. Please let me know how it works for you. Ralph On Dec 23, 2012, at 10:56 AM, R C wrote: > > Thanks again for looking

Re: [OMPI devel] Error compiling

2012-12-23 Thread R C
Thanks again for looking into this. With r27717, 'make all' gives me the error: Making all in tools/ompi_info make[2]: Entering directory `/home/rc/Downloads/ompi/objd/ompi/tools/ompi_info' CC ompi_info.o CC param.o ../../../../ompi/tools/ompi_info/param.c: In function ‘ompi_info_do_co

Re: [OMPI devel] Error compiling

2012-12-23 Thread Ralph Castain
Sorry about that - copy/paste error, combined with being in a hurry and not testing. Should be fixed now. On Dec 23, 2012, at 8:37 AM, R C wrote: > I updated to r27716, reran autogen.pl and configure, but on running 'make > all' I get this error: > > Making all in tools/orte-clean > make[2]:

Re: [OMPI devel] Error compiling

2012-12-23 Thread R C
I updated to r27716, reran autogen.pl and configure, but on running 'make all' I get this error: Making all in tools/orte-clean make[2]: Entering directory `/home/rc/Downloads/ompi/objd/orte/tools/orte-clean' CC orte-clean.o make[2]: *** No rule to make target `../../../orte/libopen-pal.la',

Re: [OMPI devel] Error compiling

2012-12-23 Thread Ralph Castain
Should be fixed with r27716. We had reorganized the linking a little while ago, and the person who did it thought that the indirect references would be resolved - i.e., that linking against liborte would automatically resolve any calls to functions in libopal since liborte is linked against libo

[OMPI devel] Error compiling

2012-12-23 Thread R C
I am trying to compile the development version of openmpi obtained through svn yesterday, on a AMD64 computer running Ubuntu 12.10 (gcc 4.7.2) with valgrind-3.8.1 installed in /usr/local After ./autogen.pl. I ran configure: ../configure FC=gfortran --with-mpi-f90-size=medium --with-f90-max-array-d