Re: [OMPI devel] [OMPI svn] svn:open-mpi r28694 - in trunk/ompi/mca/coll/hcoll: . .deps

2013-07-01 Thread Nathan Hjelm
Awesome! BTW, you added some generated files and other files by mistake (.deps, Makefile, Makefile.in, configure.params). -Nathan On Mon, Jul 01, 2013 at 06:39:44PM -0400, svn-commit-mai...@open-mpi.org wrote: > Author: jladd (Joshua Ladd) > Date: 2013-07-01 18:39:43 EDT (Mon, 01 Jul 2013) > New

Re: [OMPI devel] RFC MPI 2.2 Dist_graph addition

2013-07-01 Thread George Bosilca
As all examples are working perfectly in my version of the code I was puzzled by Jeff's issue. It turns out it's a side effect of trying to push as few items as possible instead of just pushing everything in the trunk. I'll fix it in few minutes, meanwhile I'll drop few words about what was the

Re: [OMPI devel] aclocal-1.14: error: ../../config/autogen_found_items.m4:274: file 'opal/mca/backtrace/configure.m4' does not exist

2013-07-01 Thread Joshua Ladd
Vasily, I am not able to reproduce this at all. I just did a fresh checkout of the trunk. As explained, it was truncated. I did as Jeff and Brian suggested and did 'svn up .' a couple of times (had to do 'svn cleanup' first to unlock some files apparently). I did a vpath build as you describe, a

Re: [OMPI devel] aclocal-1.14: error: ../../config/autogen_found_items.m4:274: file 'opal/mca/backtrace/configure.m4' does not exist

2013-07-01 Thread Vasiliy
Thank you, Jeff. However, I've got it working by rewriting 'include' strings in 'autogen_found_items.m4' from relative to absolute paths. As the M4 file is being, actually, generated rather than it exists in the svn tree, one has a short temporal window, just few seconds before it's getting execute

Re: [OMPI devel] [EXTERNAL] Re: aclocal-1.14: error: ../../config/autogen_found_items.m4:274: file 'opal/mca/backtrace/configure.m4' does not exist

2013-07-01 Thread Barrett, Brian W
On 7/1/13 9:52 AM, "Joshua Ladd" wrote: >I think we (MLNX) are getting corrupted/truncated checkouts. Lately, I >have been running into the following error on our internal systems when >doing a secure checkout: > >svn co https://svn.open-mpi.org/svn/ompi/trunk ompi-trunk > >svn: E175002: REPORT o

Re: [OMPI devel] aclocal-1.14: error: ../../config/autogen_found_items.m4:274: file 'opal/mca/backtrace/configure.m4' does not exist

2013-07-01 Thread Jeff Squyres (jsquyres)
That has happened to me periodically; I've usually been able to cd into the SVN dir and "svn up" to complete the checkout. On Jul 1, 2013, at 11:52 AM, Joshua Ladd wrote: > I think we (MLNX) are getting corrupted/truncated checkouts. Lately, I have > been running into the following error on o

Re: [OMPI devel] aclocal-1.14: error: ../../config/autogen_found_items.m4:274: file 'opal/mca/backtrace/configure.m4' does not exist

2013-07-01 Thread Joshua Ladd
I think we (MLNX) are getting corrupted/truncated checkouts. Lately, I have been running into the following error on our internal systems when doing a secure checkout: svn co https://svn.open-mpi.org/svn/ompi/trunk ompi-trunk svn: E175002: REPORT of '/svn/ompi/!svn/vcc/default': Could not read

Re: [OMPI devel] aclocal-1.14: error: ../../config/autogen_found_items.m4:274: file 'opal/mca/backtrace/configure.m4' does not exist

2013-07-01 Thread Jeff Squyres (jsquyres)
If it helps, here's the output from when I run autogen. On Jul 1, 2013, at 10:57 AM, Ralph Castain wrote: > Hmmm...well, I'm not sure what I can do to help. I have to agree with Jeff > that something has gotten really messed up in your checkout or system. You > might check to ensure you are

[OMPI devel] OMPI 1.7 - libevent warning

2013-07-01 Thread Shamis, Pavel
Open MPI version:1.7.2 on IB system. Test: everybody sends to everybody - Irecv, Isend, Wait. In total 1024 process. Warning: "[warn] opal_libevent2019 each event_base at once. [warn] opal_libevent2019_event_base_loop: reentrant invocation. Only one event_base_loop can run on each event_base a

Re: [OMPI devel] aclocal-1.14: error: ../../config/autogen_found_items.m4:274: file 'opal/mca/backtrace/configure.m4' does not exist

2013-07-01 Thread Ralph Castain
Hmmm...well, I'm not sure what I can do to help. I have to agree with Jeff that something has gotten really messed up in your checkout or system. You might check to ensure you are picking up the right autotools, and perhaps re-checkout the trunk. All I can tell you is that it is building just f

Re: [OMPI devel] aclocal-1.14: error: ../../config/autogen_found_items.m4:274: file 'opal/mca/backtrace/configure.m4' does not exist

2013-07-01 Thread Vasiliy
Dear Ralph, I believe I have run autogen.pl after a fresh full checkout, and not yet after an update: Open MPI autogen (buckle up!) 1. Checking tool versions Searching for autoconf ... - from my log How ../../config/autogen_found_items.m4:274 is supposed to find 'opal/mca/backtrace/configur

Re: [OMPI devel] aclocal-1.14: error: ../../config/autogen_found_items.m4:274: file 'opal/mca/backtrace/configure.m4' does not exist

2013-07-01 Thread Jeff Squyres (jsquyres)
Per Ralph's suggestion, it sounds like autogen.pl may not have been run, or may not have succeeded...? On Jul 1, 2013, at 10:11 AM, Vasiliy wrote: > As I wrote it, it *does* exist in it's place, but it's the configure > script which couldn't find it; and, yes, I've made a fresh checkout. > >

Re: [OMPI devel] aclocal-1.14: error: ../../config/autogen_found_items.m4:274: file 'opal/mca/backtrace/configure.m4' does not exist

2013-07-01 Thread Vasiliy
As I wrote it, it *does* exist in it's place, but it's the configure script which couldn't find it; and, yes, I've made a fresh checkout. On Mon, Jul 1, 2013 at 4:02 PM, Jeff Squyres (jsquyres) wrote: > Sounds like you have a busted SVN checkout -- that file exists for me: > > [10:02] jsquyres-ma

Re: [OMPI devel] aclocal-1.14: error: ../../config/autogen_found_items.m4:274: file 'opal/mca/backtrace/configure.m4' does not exist

2013-07-01 Thread Ralph Castain
Or you might try rerunning autogen.pl in case you updated and didn't catch that something requiring autogen changed On Jul 1, 2013, at 7:02 AM, "Jeff Squyres (jsquyres)" wrote: > Sounds like you have a busted SVN checkout -- that file exists for me: > > [10:02] jsquyres-mac:~/s/ompi3 ❯❯❯ svnv

Re: [OMPI devel] aclocal-1.14: error: ../../config/autogen_found_items.m4:274: file 'opal/mca/backtrace/configure.m4' does not exist

2013-07-01 Thread Jeff Squyres (jsquyres)
Sounds like you have a busted SVN checkout -- that file exists for me: [10:02] jsquyres-mac:~/s/ompi3 ❯❯❯ svnversion . 28688 [10:02] jsquyres-mac:~/s/ompi3 ❯❯❯ svn info opal/mca/backtrace/configure.m4 Path: opal/mca/backtrace/configure.m4 Name: configure.m4 Working Copy Root Path: /Users/jsquyres/

[OMPI devel] aclocal-1.14: error: ../../config/autogen_found_items.m4:274: file 'opal/mca/backtrace/configure.m4' does not exist

2013-07-01 Thread Vasiliy
Hello, There is an error while configuring OpenMPI from the svn checkout with aclocal not being able to find 'opal/mca/backtrace/configure.m4', which, in fact, does exist there. What changes are needed to fix that? Note: it has stepped in the 'opal/libltdl' directory just before that error: ***

Re: [OMPI devel] RFC MPI 2.2 Dist_graph addition

2013-07-01 Thread Jeff Squyres (jsquyres)
George -- All 4 tests fail for me -- can you have a look? - [6:50] savbu-usnic-a:~/s/o/dist_graph ❯❯❯ mpirun --mca btl tcp,sm,self --host mpi001,mpi002,mpi003,mpi004 -np 5 --bynode distgraph_test_1 [mpi002:5304] *** An error occurred in MPI_Dist_graph_create [mpi002:5304] *** reported by pro

Re: [OMPI devel] Barrier Implementation Oddity

2013-07-01 Thread George Bosilca
Yes, Bruck for barrier is a variant of the dissemination algorithm as described in: - Debra Hensgen, Raphael Finkel, and Udi Manbet. Two algorithms for barrier synchronization. International Journal of Parallel Programming, 17(1):1–17, 1988. George. On Jun 29, 2013, at 12:05 , Ronny Brende

Re: [OMPI devel] RFC MPI 2.2 Dist_graph addition

2013-07-01 Thread George Bosilca
The patch has been pushed into the trunk in r28687. George. On Jul 1, 2013, at 13:55 , George Bosilca wrote: > Guys, > > Thanks for the patch and for the tests. All these changes/cleanups are > correct, I have incorporate them all in the patch. Please find below the new > patch. > > As t

Re: [OMPI devel] RFC MPI 2.2 Dist_graph addition

2013-07-01 Thread George Bosilca
Ahem … George. topo.patch Description: Binary data On Jul 1, 2013, at 13:55 , George Bosilca wrote: > Guys, > > Thanks for the patch and for the tests. All these changes/cleanups are > correct, I have incorporate them all in the patch. Please find below the new > patch. > > As the dead

Re: [OMPI devel] RFC MPI 2.2 Dist_graph addition

2013-07-01 Thread George Bosilca
Guys, Thanks for the patch and for the tests. All these changes/cleanups are correct, I have incorporate them all in the patch. Please find below the new patch. As the deadline for the RFC is today, I'll move forward and push the changes into the trunk, and if there are still issues we can work

Re: [OMPI devel] RFC MPI 2.2 Dist_graph addition

2013-07-01 Thread Kawashima, Takahiro
George, My colleague was working on your ompi-topo bitbucket repository but it was not completed. But he found bugs in your patch attached in your previous mail and created the fixing patch. See the attached patch, which is a patch against Open MPI trunk + your patch. His test programs are also a