Re: [OMPI devel] [OMPI svn] svn:open-mpi r9474

2006-03-30 Thread Tim S. Woodall
Gleb - we seem to be missing btl_mvapi_eager_rdma.h g...@osl.iu.edu wrote: Author: gleb Date: 2006-03-30 07:55:31 EST (Thu, 30 Mar 2006) New Revision: 9474 Modified: trunk/ompi/mca/btl/mvapi/Makefile.am trunk/ompi/mca/btl/mvapi/btl_mvapi.h trunk/ompi/mca/btl/mvapi/btl_mvapi_component

Re: [OMPI devel] [OMPI svn] svn:open-mpi r9118

2006-02-23 Thread Tim S. Woodall
Thanks Brian... brbar...@osl.iu.edu wrote: Author: brbarret Date: 2006-02-22 19:39:01 -0500 (Wed, 22 Feb 2006) New Revision: 9118 Modified: trunk/ompi/communicator/comm.c trunk/ompi/mca/pml/base/pml_base_bsend.h trunk/ompi/mca/pml/base/pml_base_module_exchange.c trunk/ompi/mca/pml/

Re: [O-MPI devel] while-loop around opal_condition_wait

2006-01-11 Thread Tim S. Woodall
Rainer Keller wrote: Hello dear all, I had a point on the tbd-list, that I would like to ask here: - Shouldn't we have a while-loop condition around every occurence of opal_condition_wait (spurious wake-ups) As we may do a pthread_cond_wait, e.g. in opal_free_list.h and OPAL_FREE_LIS

Re: [O-MPI devel] [OMPI svn] svn:open-mpi r8643

2006-01-05 Thread Tim S. Woodall
Yo Jeff, jsquy...@osl.iu.edu wrote: Author: jsquyres Date: 2006-01-04 17:29:09 -0500 (Wed, 04 Jan 2006) New Revision: 8643 Modified: trunk/orte/mca/oob/tcp/oob_tcp.c Log: Avoid a false positive in bcheck Modified: trunk/orte/mca/oob/tcp/oob_tcp.c ==

Re: [O-MPI devel] open-mpi.org

2005-12-21 Thread Tim S. Woodall
It's down today for upgrade. Greg Watson wrote: Is there some problem with the web site? I'm getting an error connecting to the server. Greg ___ devel mailing list de...@open-mpi.org http://www.open-mpi.org/mailman/listinfo.cgi/devel

Re: [O-MPI devel] [PATH] ompi_info doesn't show use_mem_hooks flag

2005-12-06 Thread Tim S. Woodall
Hello Gleb, Gleb Natapov wrote: On Mon, Dec 05, 2005 at 10:23:14AM -0700, Galen M. Shipman wrote: Also there is a code commented out that enables memory hooks if leave_pinned is set. Why this code is disabled? Infiniband will not work correctly in such setup. There is still some debate about

Re: [O-MPI devel] [OMPI svn-full] svn:open-mpi r8379 - trunk/ompi/mca/btl/self

2005-12-06 Thread Tim S. Woodall
Most definately. Any large sends to self would not deliver the correct data, exhibited in NPB2.3. Tim Jeff Squyres wrote: Tim -- Does this need to come over to v1.0? On Dec 5, 2005, at 6:36 PM, twood...@osl.iu.edu wrote: Author: twoodall Date: 2005-12-05 18:36:33 -0500 (Mon, 05 Dec 2005)

Re: [O-MPI devel] TCP performance

2005-11-29 Thread Tim S. Woodall
George Bosilca wrote: Tim, It looks a little bit better. Here are the latencies for 1 to 4 bytes messages as well as for the maximum length in Netpipe (8 MB). old ob1: 0: 1 bytes694 times --> 0.06 Mbps in 137.54 usec 1: 2 bytes727 times --> 0.11 Mbps i

Re: [O-MPI devel] TCP performance

2005-11-29 Thread Tim S. Woodall
George, Can you try out the changes I just commited on the trunk? We were doing more select/recvs then necessary. Thanks, Tim George Bosilca wrote: I run Netpipe on 4 different clusters with differents OSes and Eternet devices. The results is that nearly the same behaviour happens all the ti

[O-MPI devel] tcp performance

2005-11-01 Thread Tim S. Woodall
Linpack runs on odin: TEG/TCP PTL: /u/twoodall> orterun -mca pml teg -mca ptl tcp -np 4 ./xhpl HPLinpack 1.0a -- High-Performance Linpack benchmark -- January 20, 2004 Written by A. Petitet and R. Clint Whaley, I

Re: [O-MPI devel] [PATCH] casting is bad!

2005-10-31 Thread Tim S. Woodall
Agreed! Thanks, Tim Gleb Natapov wrote: Index: ompi/mca/btl/openib/btl_openib_component.c === --- ompi/mca/btl/openib/btl_openib_component.c (revision 7935) +++ ompi/mca/btl/openib/btl_openib_component.c (working copy) @@ -165,7

Re: [O-MPI devel] [PATCH] openib btl.

2005-10-27 Thread Tim S. Woodall
Gleb, Thanks! I'll try to apply these today. Tim Gleb Natapov wrote: Return unused entry to free list before trying to allocate new one. Otherwise the code may deadlock. Index: ompi/mca/btl/openib/btl_openib_component.c === ---

[O-MPI devel] --with-mvapi/--with-btl-mvapi???

2005-09-21 Thread Tim S. Woodall
Note that the recent change to the configure script(s) to use --with-mvapi instead of --with-btl-mvapi are not complete. I've recently had to use both to compile mvapi. This is causing a great deal of pain for external users. Can someone please look at this?

[O-MPI devel] [Fwd: OMPI mpif.h problems]

2005-09-21 Thread Tim S. Woodall
Can anyone comment on this? Original Message Subject: OMPI mpif.h problems List-Post: devel@lists.open-mpi.org Date: Wed, 21 Sep 2005 12:27:13 -0600 From: David R. (Chip) Kent IV To: Tim S. Woodall References: <20050914164817.gj2...@duckhorn.lanl.gov> <4328

Re: [O-MPI devel] Registration Cache changes

2005-09-21 Thread Tim S. Woodall
Gleb Natapov wrote: Hello Galen, Finally I've got some time to look through the new code. I have couple of notes. In pml_ob1_rdma.c you try to merge registrations in the number of places. The code looks like this: btl_mpool->mpool_deregister(btl_mpool, reg); btl_mpool->mpool_register(bt

Re: [O-MPI devel] Fwd: [O-MPI users] HOWTO turn of "multi-rail" support at runtime?

2005-09-21 Thread Tim S. Woodall
I was pretty sure that's what the priority code did now, but wanted to make sure I wasn't losing it ;). Brian Begin forwarded message: From: "Tim S. Woodall" Date: September 20, 2005 7:51:42 PM GMT+02:00 To: Open MPI Users Subject: Re: [O-MPI users] HOWTO turn of "

Re: [O-MPI devel] error message on make

2005-09-14 Thread Tim S. Woodall
Jeff Squyres wrote: On Sep 14, 2005, at 5:40 PM, Tim S. Woodall wrote: Jeff - seems like a configure/build issue to me. Shouldn't we disable numa support and not try to build it if the supporting libraries don't exist? Not sure what you mean -- the supporting library *d

Re: [O-MPI devel] error message on make

2005-09-14 Thread Tim S. Woodall
Jeff - seems like a configure/build issue to me. Shouldn't we disable numa support and not try to build it if the supporting libraries don't exist? Thanks, Tim Jeff Squyres wrote: I believe the problem is that you are trying to link statically, but there is no static version of libnuma availa

Re: [O-MPI devel] OMPI compile failing

2005-09-13 Thread Tim S. Woodall
Nathan - What machine are you on? Galen - have you tried GM w/ your changes? Nathan DeBardeleben wrote: Compiling I get: gcc -DHAVE_CONFIG_H -I. -I. -I../../../../include -I../../../../include -I../../../../include -I../../../.. -I../../../.. -I../../../../include -I../../../../opal -I../

Re: [O-MPI devel] Totalview Support

2005-09-02 Thread Tim S. Woodall
Jeff - Do you have totalview on any of your machines at IU? Jeff Squyres wrote: FYI -- David recently committed support for Totalview to attach to Open MPI jobs. I added a FAQ entry on the web site about how to use it (in particular, we suggest adding a $HOME/.tvdrc file -- see the FAQ):

[O-MPI devel] cleanup

2005-09-02 Thread Tim S. Woodall
Ctrl^C handling in orte seems to be broken. I know get a core file for every orted that is spawned on remote nodes when I attempt to kill a job via Crtl^C or orterun. This behaviour has actually been around for about a week know. Anyone else seeing this? Tim

Re: [O-MPI devel] gm configure status

2005-09-01 Thread Tim S. Woodall
le-mca-no-build=ptl-gm to your configure line, then rebuilding. I hope to have a proper solution later today. Brian - On Sep 1, 2005, at 10:00 AM, Tim S. Woodall wrote: What is the status of the gm configure issue: mpicc -O -DMPI ./src/netpipe.c ./src/mpi.c -o NP

[O-MPI devel] gm configure status

2005-09-01 Thread Tim S. Woodall
What is the status of the gm configure issue: mpicc -O -DMPI ./src/netpipe.c ./src/mpi.c -o NPmpi -I./src gcc: WRAPPER_ALWAYS_EXTRA_LIBS: No such file or directory gcc: WRAPPER_ALWAYS_EXTRA_LIBS: No such file or directory Is there a simple work-around, or should I just compile/link the app w/ou

Re: [O-MPI devel] OMPI 32bit on a 64bit Linux box

2005-08-19 Thread Tim S. Woodall
ross last Friday, before I had to stop. Something is getting mangled in the packing of the command sent to the seed. I had to wrap up before I could seek a good fix, just enough to characterize the problem. Thoughts? Sorry for causing trouble, Josh On Aug 18, 2005, at 3:33 PM,

Re: [O-MPI devel] OMPI 32bit on a 64bit Linux box

2005-08-18 Thread Tim S. Woodall
was seeing some weird memory issues on static builds last night... I'll take a look on odin and see what I can find. Brian On Aug 18, 2005, at 11:18 AM, Tim S. Woodall wrote: Brian, Wasn't the introduction of sds part of your changes for redstorm? Any ideas why it would b

Re: [O-MPI devel] OMPI 32bit on a 64bit Linux box

2005-08-18 Thread Tim S. Woodall
email: ndeb...@lanl.gov ------------- Tim S. Woodall wrote: Nathan, I'll try to reproduce this sometime this week - but I'm pretty swamped. Is Greg also seeing the same behavior? Thanks, Tim Nathan DeBardeleben wrote:

Re: [O-MPI devel] ob1 -> default?

2005-08-18 Thread Tim S. Woodall
Brian Barrett wrote: On Aug 17, 2005, at 5:08 AM, Jeff Squyres wrote: Is ob1 and the BTLs stable enough to be made the default? Is it getting time to retire teg and the PTLs? I'd vote for making ob1 the default. I'd like to leave teg and the ptls for a bit longer, if only because

Re: [O-MPI devel] OMPI 32bit on a 64bit Linux box

2005-08-17 Thread Tim S. Woodall
deleben, Ph.D. Los Alamos National Laboratory Parallel Tools Team High Performance Computing Environments phone: 505-667-3428 email: ndeb...@lanl.gov ------------- Jeff Squyres wrote: Is this what Tim Prins was working on? On Aug 16, 2005, at 5:21 PM, Tim S. Woodall wrote: I'm

Re: [O-MPI devel] Fwd: Regarding MVAPI Component in Open MPI

2005-08-17 Thread Tim S. Woodall
Hello Sridhar, Jeff Squyres wrote: On Aug 17, 2005, at 8:23 AM, Sridhar Chirravuri wrote: Can someone reply to my mail please? I think you sent your first mail at 6:48am in my time zone (that is 4:48am Los Alamos time -- I strongly doubt that they are at work yet...); I'm still processin

Re: [O-MPI devel] OMPI 32bit on a 64bit Linux box

2005-08-16 Thread Tim S. Woodall
I'm not sure why this is even building... Is someone working on this? I thought we had .ompi_ignore files in this directory. Tim Nathan DeBardeleben wrote: So I'm seeing all these nice emails about people developing on OMPI today yet I can't get it to compile. Am I out here in limbo on this o

Re: [O-MPI devel] Memory registration question.

2005-08-16 Thread Tim S. Woodall
ow, that I think will address what you are looking for. Will let you know when we have something a little more concrete. Tim Gleb Natapov wrote: Hello Tim, On Thu, Aug 11, 2005 at 10:08:04AM -0600, Tim S. Woodall wrote: Hello Gleb, A couple of general comments: We initially started by maint

Re: [O-MPI devel] linux paffinity component

2005-08-15 Thread Tim S. Woodall
There is a problem in the linux code: [twoodall@roadkill linux]$ svn diff Index: paffinity_linux_module.c === --- paffinity_linux_module.c(revision 6884) +++ paffinity_linux_module.c(working copy) @@ -162,7 +162,7 @@ We

Re: [O-MPI devel] Memory registration question.

2005-08-11 Thread Tim S. Woodall
Hello Gleb, A couple of general comments: We initially started by maintaining the cache at the btl/mpool level. However, we needed to expose the registrations to the upper level (pml), to allow the pml to make scheduling decisions (which btl/protocol to use), so we re-organized this to maintain

Re: [O-MPI devel] Fwd: Regarding MVAPI Component in Open MPI

2005-08-10 Thread Tim S. Woodall
Hello Sridhar, Can you try running the mpi-ping program again with: export OMPI_MCA_oob_tcp_debug=10 orterun -np 2 ./mpi-ping I'm thinking there may be a problem setting up an OOB connection between the backend/frontend node. Tim Sridhar Chirravuri wrote: Hi, I got the latest code drop of

Re: [O-MPI devel] Fwd: Regarding MVAPI Component in Open MPI

2005-08-09 Thread Tim S. Woodall
Hello Sridhar, We'll see if we can reproduce this today. Thanks, Tim Sridhar Chirravuri wrote: The same kind of output while running Pallas "pingpong" test. -Sridhar -Original Message- From: devel-boun...@open-mpi.org [mailto:devel-boun...@open-mpi.org] On Behalf Of Sridhar Chirravu

Re: [O-MPI devel] Launching orted from Eclipse problem: solved

2005-07-28 Thread Tim S. Woodall
Greg, Thanks for tracking this down! Tim Greg Watson wrote: Hi all, To recap: the problem was that if orted was launched from Eclipse (on OS X) then subsequent attempts to run a program (using mpirun or whatever) returned immediately. If orted was launched from anywhere else (java, comm

Re: [O-MPI devel] collectives discussion @LANL

2005-07-25 Thread Tim S. Woodall
Please contact Cindy Sievers . She can assist you w/ setting up the Access Grid conference. Regards, Tim Jeff Squyres wrote: Do you have Access Grid? If you want to participate, contact Cindy (Tim -- can you send along her contact info?). I know that you (Troy) have access to the source tre

Re: [O-MPI devel] FYI: Failing intel tests

2005-07-18 Thread Tim S. Woodall
Josh Hursey wrote: So I have been working a variety of platforms [x86 32 bit, x86 64 bit, PPC 64 bit]. As of SVN Revision 6541 below are the current failures from the intel_tests suite. For all of these tests I used "tcp,self" PTLs and the TEG PML. On x86-32, x86-64, PPC64 --

Re: [O-MPI devel] collectives discussion @LANL

2005-07-18 Thread Tim S. Woodall
Torsten Hoefler wrote: Hi, Wednesday, 27 Jul, 8-11am MT (I think that's 4-7pm DE time, right?) yes, it's ok for me - I'll ask the vcc and reply to this mail if they have any problems. Can you do the 28th, too? I'd prevfer the 27th and 28th if possible (vs. 26th and 27th) b

Re: [O-MPI devel] Presentation of organization goals

2005-07-18 Thread Tim S. Woodall
I'd be glad to provide an overview of LANLs proposed '06 OpenMPI development. Tim Jeff Squyres wrote: A month or two ago, I gave the LANL guys an overview of IU's goals with respect to OMPI. There were several "Ohhh! So *that's* why you guys were asking for X, Y, and Z..." from the LANL guy