[OMPI devel] Segfault during a free in reduce_scatter using basic component

2017-03-28 Thread BRELLE, EMMANUEL
Hi, We are working on a portals4 components and we have found a bug (causing a segmentation fault ) which must be related to the coll/basic component. Due to a lack of time, we cannot investigate further but this seems to be caused by a "free(disps);" (around line 300 in coll_basic_reduce_sca

Re: [OMPI devel] Segfault during a free in reduce_scatter using basic component

2017-03-28 Thread Howard Pritchard
Hello Emmanuel, Which version of Open MPI are you using? Howard 2017-03-28 3:38 GMT-06:00 BRELLE, EMMANUEL : > Hi, > > We are working on a portals4 components and we have found a bug (causing > a segmentation fault ) which must be related to the coll/basic component. > Due to a lack of time

[OMPI devel] about PSM2 in openmpi

2017-03-28 Thread Dahai Guo via devel
I installed  intel PSM2 and then configured open mpi as follow. ./configure \ --prefix=$HOME/ompi_install \ --with-psm2=$HOME/PSM2_install/usr \ --with-psm2-libdir=$HOME/PSM2_install/usr/lib64 however, when I ran a Hello prgram, it  said mpirun -n 2 hi0 mca_base_component_reposit

Re: [OMPI devel] about PSM2 in openmpi

2017-03-28 Thread r...@open-mpi.org
How did you compile your app? Using mpicc? > On Mar 28, 2017, at 9:55 AM, Dahai Guo via devel > wrote: > > I installed intel PSM2 and then configured open mpi as follow. > > > ./configure \ > --prefix=$HOME/ompi_install \ > --with-psm2=$HOME/PSM2_install/usr \ > --with-psm2-libdir=$HOME

Re: [OMPI devel] Segfault during a free in reduce_scatter using basic component

2017-03-28 Thread George Bosilca
Emmanuel, I tried with both 2.x and master (they are only syntactically different with regard to reduce_scatter) and I can't reproduce your issue. I run the OSU test with the following command line: mpirun -n 97 --mca coll basic,libnbc,self --mca pml ob1 ./osu_reduce_scatter -m 524288: -i 1 -x 0

Re: [OMPI devel] about PSM2 in openmpi

2017-03-28 Thread gilles
Hi, this looks like the expected behavior to me. can you try to ./configure --enable-mpirun-prefix-by-default ... and rebuild again ? iirc, this should add $HOME/PSM2_install/usr/lib64 to the rpath of Open MPI, and you will no more need to add it to your LD_LIBRARY_PATH Cheers, Gilles --

Re: [OMPI devel] 2.0.2 SRPM in "install_in_opt" configuration creates file outside /opt

2017-03-28 Thread Jeff Squyres (jsquyres)
On Mar 23, 2017, at 5:25 PM, Kevin Buckley wrote: > > * I think the reasoning for me, is that if the SRPM is being used to create > an OpenMPI that will supercede the RHEL/CentOS system's version > then adding the module into a system area is the right thing, but if an > admin goes to the troubl

Re: [OMPI devel] 2.0.2 SRPM in "install_in_opt" configuration creates file outside /opt

2017-03-28 Thread Jeff Squyres (jsquyres)
I have no objections to this. Unfortunately, I don't have the time to work on it, but we'd be glad to look at pull requests to introduce this functionality. :-) > On Mar 23, 2017, at 6:07 PM, Kevin Buckley > wrote: > > Another than occured to me whilst looking around this > was whether the

Re: [OMPI devel] Segfault during a free in reduce_scatter using basic component

2017-03-28 Thread Gilles Gouaillardet
Folks, mpirun -np 3 --oversubscribe --mca coll basic,libnbc,self --mca pml ob1 --mca btl tcp,self valgrind ./osu_reduce_scatter -m 65536:65536 -i 1 -x 0 issues some warnings such as ==5698== Invalid write of size 2 ==5698==at 0x4C2C0D3: memcpy@@GLIBC_2.14 (vg_replace_strmem.c:1018) ==56