Feel free to harvest the source of this file if anyone would like to publish something in a more visible location:
https://git.nzoss.org.nz/tim-mcnamara/notebook/blob/master/image-processing-tutorials.md Tim McNamara https://tim.mcnamara.nz | @timClicks <http://twitter.com/timClicks> On 16 August 2018 at 11:04, Steven Haddock <hadd...@mbari.org> wrote: > Maybe someone could collate this info into a blog post to preserve? > > -Steve > > > > On Aug 15, 2018, at 12:16 , Pablo Hernandez via discuss < > discuss@lists.carpentries.org> wrote: > > > > Hello all, such a good collection of resources! > > > > I would like to add the effort of the image analysis library Insight > ToolKit (ITK) to quickly create 3D visualizations in the web and/or with > jupyter notebooks. > > > > They are not in a lesson format, but it is promising! > > > > Here is a mybinder with all the dependencies installed: > > > > https://mybinder.org/v2/gh/InsightSoftwareConsortium/itk- > jupyter-widgets/master?filepath=examples%2F3DImage.ipynb > > > > https://mybinder.org/v2/gh/InsightSoftwareConsortium/itk- > jupyter-widgets/master?filepath=examples/SpecifyAColormap.ipynb > > > > https://mybinder.org/v2/gh/InsightSoftwareConsortium/itk- > jupyter-widgets/master?filepath=examples/SelectRegionOfInterest.ipynb > > > > Based on this repo: https://github.com/InsightSoftwareConsortium/itk- > jupyter-widgets > > > > There is also a course of Biomedical Image Analysis and Visualization: > https://github.com/KitwareMedical/2018-05-30- > KRSCourseInBiomedicalImageAnalysisAndVisualization > > > > If the user is running the notebooks locally, instead of in mybinder, we > just need: > > `pip install --user itkwidgets` > > > > Best regards, > > Pablo > > > > > > On Wed, Aug 15, 2018 at 12:59 PM, mbgoodman via discuss < > discuss@lists.carpentries.org> wrote: > > Hello all, > > I am sorry I missed this thread in May. As Amy Hodge noted, we have > been developing image processing lessons at Stanford. The first iteration > was held in 2017 and was built by a team of Stanford grad students mentored > by Greg Wilson. We are in the midst of updating four lessons for the next > iteration, to be held in 2018. I need to check in with the current TA team > about updates, but initial github repo is here: > > https://github.com/DataLucence/images > > > > I am digesting all of the other resources noted in this thread over the > next 6 weeks. > > > > -Miriam Goodman > > > > The Carpentries / discuss / see discussions + participants + delivery > options Permalink > > ------------------------------------------ > The Carpentries: discuss > Permalink: https://carpentries.topicbox.com/groups/discuss/ > T4240adcd25206bde-Me7b8397d57155e8c76fbf60b > Delivery options: https://carpentries.topicbox.com/groups/discuss/ > subscription > ------------------------------------------ The Carpentries: discuss Permalink: https://carpentries.topicbox.com/groups/discuss/T4240adcd25206bde-M4c8e0b7244e2da3401dd057c Delivery options: https://carpentries.topicbox.com/groups/discuss/subscription
